miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 5' -53.9 NC_006273.1 + 164688 1.15 0.003242
Target:  5'- cGGGUACACCAUCUCGAGUUGCCGCGCg -3'
miRNA:   3'- -CCCAUGUGGUAGAGCUCAACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 150216 0.75 0.672583
Target:  5'- uGGGUGCGCUcgCUgGcGGUUGaCGCGCa -3'
miRNA:   3'- -CCCAUGUGGuaGAgC-UCAACgGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 80748 0.74 0.750308
Target:  5'- ---aACGCCGUCUCGucGUUGCCGC-Cg -3'
miRNA:   3'- cccaUGUGGUAGAGCu-CAACGGCGcG- -5'
30176 5' -53.9 NC_006273.1 + 31238 0.74 0.76892
Target:  5'- cGGGgcgACACgGUacgcCGGGUaGCCGCGCa -3'
miRNA:   3'- -CCCa--UGUGgUAga--GCUCAaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 165168 0.73 0.778056
Target:  5'- cGGU-CACCAUCUCGcaUUGuuGCGUg -3'
miRNA:   3'- cCCAuGUGGUAGAGCucAACggCGCG- -5'
30176 5' -53.9 NC_006273.1 + 46903 0.73 0.795946
Target:  5'- gGGGUGCGCgCGUCUccCGAGgccgaGgCGCGCu -3'
miRNA:   3'- -CCCAUGUG-GUAGA--GCUCaa---CgGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 8405 0.73 0.804684
Target:  5'- aGGGUaggugcguuuugGCGCCGUg-C-AGUUGCCGCGCc -3'
miRNA:   3'- -CCCA------------UGUGGUAgaGcUCAACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 204337 0.73 0.804684
Target:  5'- gGGGUGCGCCGacCUUGAaauggGUCGCGCu -3'
miRNA:   3'- -CCCAUGUGGUa-GAGCUcaa--CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 176922 0.73 0.813273
Target:  5'- cGGUGCGCgcuagCGUCgauuugugcaagUCGGGuUUGCCGCGCu -3'
miRNA:   3'- cCCAUGUG-----GUAG------------AGCUC-AACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 33072 0.72 0.845986
Target:  5'- cGGGUGCGCgCcugCUCGucaucGCCGCGCc -3'
miRNA:   3'- -CCCAUGUG-Gua-GAGCucaa-CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 175604 0.72 0.853719
Target:  5'- cGGUGCGCCGUUUUG---UGCUGCGUc -3'
miRNA:   3'- cCCAUGUGGUAGAGCucaACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 94368 0.71 0.86126
Target:  5'- uGGaGCACCAUC-CGGGgccguggGCCGgGCa -3'
miRNA:   3'- cCCaUGUGGUAGaGCUCaa-----CGGCgCG- -5'
30176 5' -53.9 NC_006273.1 + 70905 0.71 0.868604
Target:  5'- cGGGUuucaGCGuCCGgcCUCGGGUUGCCuggacgccuggGCGCg -3'
miRNA:   3'- -CCCA----UGU-GGUa-GAGCUCAACGG-----------CGCG- -5'
30176 5' -53.9 NC_006273.1 + 2231 0.71 0.875745
Target:  5'- cGGGUccgGCGgCGUCg-GGGaccgUGCCGCGCg -3'
miRNA:   3'- -CCCA---UGUgGUAGagCUCa---ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 197124 0.71 0.875745
Target:  5'- cGGGUccgGCGgCGUCg-GGGaccgUGCCGCGCg -3'
miRNA:   3'- -CCCA---UGUgGUAGagCUCa---ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 112101 0.71 0.88268
Target:  5'- uGGaagGCGgCAUCUCGGG--GCCGCGUg -3'
miRNA:   3'- cCCa--UGUgGUAGAGCUCaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 197728 0.71 0.895908
Target:  5'- cGGGcucucGCGCCGUCaacagCGuGccuuUUGCCGCGCg -3'
miRNA:   3'- -CCCa----UGUGGUAGa----GCuC----AACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 171808 0.71 0.895908
Target:  5'- cGGGUACACCGcugaggugCUCGAGa-GUCGUGg -3'
miRNA:   3'- -CCCAUGUGGUa-------GAGCUCaaCGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 123044 0.7 0.902195
Target:  5'- aGGGUcgucGCACCGUUUCGcGUcgcaGCCGCagGCg -3'
miRNA:   3'- -CCCA----UGUGGUAGAGCuCAa---CGGCG--CG- -5'
30176 5' -53.9 NC_006273.1 + 197176 0.7 0.902195
Target:  5'- cGGUuucCGCCGUCUCcggauGAGcgGCCGCGg -3'
miRNA:   3'- cCCAu--GUGGUAGAG-----CUCaaCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.