miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 5' -53.9 NC_006273.1 + 113492 0.66 0.983635
Target:  5'- uGGGUucggAUGCCGUagccggcggCGGGUUGCCcgggggGCGCg -3'
miRNA:   3'- -CCCA----UGUGGUAga-------GCUCAACGG------CGCG- -5'
30176 5' -53.9 NC_006273.1 + 178717 0.67 0.981728
Target:  5'- uGGGUcCGCUA-CUCGuggcGUUGUCGaCGCu -3'
miRNA:   3'- -CCCAuGUGGUaGAGCu---CAACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 103759 0.67 0.981728
Target:  5'- ---cGCGCCGguaCUCGAGcaaCCGCGCg -3'
miRNA:   3'- cccaUGUGGUa--GAGCUCaacGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 49619 0.67 0.979659
Target:  5'- uGGUggGCGCCAgCUCGuAGaUGCaguCGCGCa -3'
miRNA:   3'- cCCA--UGUGGUaGAGC-UCaACG---GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 214060 0.67 0.979659
Target:  5'- cGGGUu--CCG-CUCGcGGUUGCgguCGCGCa -3'
miRNA:   3'- -CCCAuguGGUaGAGC-UCAACG---GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 92663 0.67 0.979659
Target:  5'- ---aGCACCGUCUCGcugUGCuuaCGCGCc -3'
miRNA:   3'- cccaUGUGGUAGAGCucaACG---GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 21537 0.67 0.975007
Target:  5'- cGGGcGCuggCGUUUCGAGgacgGCgGCGCg -3'
miRNA:   3'- -CCCaUGug-GUAGAGCUCaa--CGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 68538 0.67 0.975007
Target:  5'- uGG-ACugCAUC-CGuccGGUggUGCCGCGCu -3'
miRNA:   3'- cCCaUGugGUAGaGC---UCA--ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 118773 0.67 0.97241
Target:  5'- cGGUACGCaCGUCgcCGuccauGUcGCUGCGCa -3'
miRNA:   3'- cCCAUGUG-GUAGa-GCu----CAaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 131327 0.67 0.971594
Target:  5'- aGGGccaguacaGCACCAUCUCcaccguggagGAGUacgugcgcagcuucUGCaCGCGCg -3'
miRNA:   3'- -CCCa-------UGUGGUAGAG----------CUCA--------------ACG-GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 72343 0.68 0.969624
Target:  5'- --cUGCACCGUCUCGc----CCGCGCu -3'
miRNA:   3'- cccAUGUGGUAGAGCucaacGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 140860 0.68 0.969624
Target:  5'- gGGGUgggaaGCcCCcgCUCGGGUccccccggGCCGCGg -3'
miRNA:   3'- -CCCA-----UGuGGuaGAGCUCAa-------CGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 188887 0.68 0.966642
Target:  5'- uGGGU-CAaCAUCUCGAGcaGCagGCGCc -3'
miRNA:   3'- -CCCAuGUgGUAGAGCUCaaCGg-CGCG- -5'
30176 5' -53.9 NC_006273.1 + 90927 0.68 0.966642
Target:  5'- cGGGUacaacggcacgcGCACCGcCUCGcc--GCCGUGCa -3'
miRNA:   3'- -CCCA------------UGUGGUaGAGCucaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 87905 0.68 0.966642
Target:  5'- cGGGcACGCCGaagcaaaUgGAGUUGCC-CGCg -3'
miRNA:   3'- -CCCaUGUGGUag-----AgCUCAACGGcGCG- -5'
30176 5' -53.9 NC_006273.1 + 204725 0.68 0.963459
Target:  5'- aGGcGCGCCcgCUgCGAucugcgGUUGCCGaCGCg -3'
miRNA:   3'- cCCaUGUGGuaGA-GCU------CAACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 121847 0.68 0.963459
Target:  5'- uGGGgauguuCAgCAUCUUGAGcgGCaGCGCg -3'
miRNA:   3'- -CCCau----GUgGUAGAGCUCaaCGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 181666 0.68 0.963459
Target:  5'- cGGcagUGCCGUCUCGGGU--CCGUGCa -3'
miRNA:   3'- cCCau-GUGGUAGAGCUCAacGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 104100 0.68 0.963459
Target:  5'- uGGGU-CAUguUCUUGGGaaGCCGCGg -3'
miRNA:   3'- -CCCAuGUGguAGAGCUCaaCGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 144068 0.68 0.962465
Target:  5'- cGGUACGCCAguagC-CGAGgacUuuaugacgcgcgugGCCGCGCu -3'
miRNA:   3'- cCCAUGUGGUa---GaGCUCa--A--------------CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.