miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 5' -53.9 NC_006273.1 + 152595 0.68 0.962129
Target:  5'- aGGUccuGCGCCAgcgggugugUCUCG-GUggcccgcugcacgGCCGCGCg -3'
miRNA:   3'- cCCA---UGUGGU---------AGAGCuCAa------------CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 141446 0.68 0.960071
Target:  5'- aGGGcGCGCC-UCccgCGGGUccugGcCCGCGCa -3'
miRNA:   3'- -CCCaUGUGGuAGa--GCUCAa---C-GGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 101904 0.68 0.960071
Target:  5'- --cUGCACgGUCUcuugCGGGUUGCgGUGCg -3'
miRNA:   3'- cccAUGUGgUAGA----GCUCAACGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 198870 0.68 0.960071
Target:  5'- cGGUcCGCCgGUCUCGAcg-GaCCGCGCc -3'
miRNA:   3'- cCCAuGUGG-UAGAGCUcaaC-GGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 101264 0.68 0.956472
Target:  5'- aGGUA-GCCAUCgcCGAGUgcGCgGCGCa -3'
miRNA:   3'- cCCAUgUGGUAGa-GCUCAa-CGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 133147 0.68 0.956472
Target:  5'- cGGGUGCuaagaagcuGCUcuugCUCGAcgUGCCGCGUc -3'
miRNA:   3'- -CCCAUG---------UGGua--GAGCUcaACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 53772 0.68 0.956472
Target:  5'- -cGUGCACCGUCUgggcCGGGcaauccuggUGuuGCGCg -3'
miRNA:   3'- ccCAUGUGGUAGA----GCUCa--------ACggCGCG- -5'
30176 5' -53.9 NC_006273.1 + 58204 0.68 0.956472
Target:  5'- ---cACACCGUCuccuccUCGAacacggUGCCGCGCg -3'
miRNA:   3'- cccaUGUGGUAG------AGCUca----ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 139415 0.69 0.948625
Target:  5'- gGGGUGCAUCAUCUgGuAGcgcUUGCggcacaGCGCc -3'
miRNA:   3'- -CCCAUGUGGUAGAgC-UC---AACGg-----CGCG- -5'
30176 5' -53.9 NC_006273.1 + 132407 0.69 0.944371
Target:  5'- cGGUcuggcgcgacACACCGUCuUUGAGUuaUGUCGCGg -3'
miRNA:   3'- cCCA----------UGUGGUAG-AGCUCA--ACGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 145873 0.69 0.944371
Target:  5'- aGGUGCGCC-UCaaGAGcaGCCGCGa -3'
miRNA:   3'- cCCAUGUGGuAGagCUCaaCGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 70936 0.69 0.93519
Target:  5'- ---gACAUCGUCaUCGAGcgGCCGCGg -3'
miRNA:   3'- cccaUGUGGUAG-AGCUCaaCGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 5140 0.69 0.93519
Target:  5'- cGGGUACAUCA---UGAGUUGCCucaugauaaaccGCGUc -3'
miRNA:   3'- -CCCAUGUGGUagaGCUCAACGG------------CGCG- -5'
30176 5' -53.9 NC_006273.1 + 31844 0.69 0.933734
Target:  5'- uGGGUGCccacggacuuggACCAUCUCacucugcauuuggUGCCGUGCa -3'
miRNA:   3'- -CCCAUG------------UGGUAGAGcuca---------ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 208057 0.69 0.930259
Target:  5'- uGGGUGacgaCAUCUCGAGgucaugugGCCGCu- -3'
miRNA:   3'- -CCCAUgug-GUAGAGCUCaa------CGGCGcg -5'
30176 5' -53.9 NC_006273.1 + 198635 0.69 0.930259
Target:  5'- uGGUGCaucccgACCAUCgggcCGAGcugUGCCGcCGCu -3'
miRNA:   3'- cCCAUG------UGGUAGa---GCUCa--ACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 196028 0.7 0.9251
Target:  5'- cGGGUaGCGCCGcCUCGucGUcguccaucgUGCCGCGg -3'
miRNA:   3'- -CCCA-UGUGGUaGAGCu-CA---------ACGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 24438 0.7 0.9251
Target:  5'- uGGGUGCAUCGcUUCGAgGUUGUCGUcCg -3'
miRNA:   3'- -CCCAUGUGGUaGAGCU-CAACGGCGcG- -5'
30176 5' -53.9 NC_006273.1 + 197176 0.7 0.902195
Target:  5'- cGGUuucCGCCGUCUCcggauGAGcgGCCGCGg -3'
miRNA:   3'- cCCAu--GUGGUAGAG-----CUCaaCGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 123044 0.7 0.902195
Target:  5'- aGGGUcgucGCACCGUUUCGcGUcgcaGCCGCagGCg -3'
miRNA:   3'- -CCCA----UGUGGUAGAGCuCAa---CGGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.