miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 5' -53.9 NC_006273.1 + 600 0.66 0.986992
Target:  5'- aGGGUGCGCg--CUCGGGgacccaGuCCGCGg -3'
miRNA:   3'- -CCCAUGUGguaGAGCUCaa----C-GGCGCg -5'
30176 5' -53.9 NC_006273.1 + 2231 0.71 0.875745
Target:  5'- cGGGUccgGCGgCGUCg-GGGaccgUGCCGCGCg -3'
miRNA:   3'- -CCCA---UGUgGUAGagCUCa---ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 2393 0.66 0.988458
Target:  5'- uGGGgcgcgagucgGCGCCcgCcgcCGAG--GCCGCGCg -3'
miRNA:   3'- -CCCa---------UGUGGuaGa--GCUCaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 5140 0.69 0.93519
Target:  5'- cGGGUACAUCA---UGAGUUGCCucaugauaaaccGCGUc -3'
miRNA:   3'- -CCCAUGUGGUagaGCUCAACGG------------CGCG- -5'
30176 5' -53.9 NC_006273.1 + 8405 0.73 0.804684
Target:  5'- aGGGUaggugcguuuugGCGCCGUg-C-AGUUGCCGCGCc -3'
miRNA:   3'- -CCCA------------UGUGGUAgaGcUCAACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 13574 0.66 0.985387
Target:  5'- cGGGUGCucacccGCCGggcggCcCGGGccGCCGUGCu -3'
miRNA:   3'- -CCCAUG------UGGUa----GaGCUCaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 21537 0.67 0.975007
Target:  5'- cGGGcGCuggCGUUUCGAGgacgGCgGCGCg -3'
miRNA:   3'- -CCCaUGug-GUAGAGCUCaa--CGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 24438 0.7 0.9251
Target:  5'- uGGGUGCAUCGcUUCGAgGUUGUCGUcCg -3'
miRNA:   3'- -CCCAUGUGGUaGAGCU-CAACGGCGcG- -5'
30176 5' -53.9 NC_006273.1 + 25704 0.66 0.988458
Target:  5'- cGGUACGuuggUCAUCUCG----GCCGCGUu -3'
miRNA:   3'- cCCAUGU----GGUAGAGCucaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 29306 0.66 0.991003
Target:  5'- aGGGcUACGCgga-UCGAG-UGCCGaCGCc -3'
miRNA:   3'- -CCC-AUGUGguagAGCUCaACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 31238 0.74 0.76892
Target:  5'- cGGGgcgACACgGUacgcCGGGUaGCCGCGCa -3'
miRNA:   3'- -CCCa--UGUGgUAga--GCUCAaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 31269 0.66 0.989792
Target:  5'- aGGUcaACAaCCAgagccgUUCGGGgcgugcgGCCGCGCu -3'
miRNA:   3'- cCCA--UGU-GGUa-----GAGCUCaa-----CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 31844 0.69 0.933734
Target:  5'- uGGGUGCccacggacuuggACCAUCUCacucugcauuuggUGCCGUGCa -3'
miRNA:   3'- -CCCAUG------------UGGUAGAGcuca---------ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 31979 0.66 0.986992
Target:  5'- uGGUGCGCgAUC-CGcuGUUGCgcgaccCGCGCg -3'
miRNA:   3'- cCCAUGUGgUAGaGCu-CAACG------GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 33072 0.72 0.845986
Target:  5'- cGGGUGCGCgCcugCUCGucaucGCCGCGCc -3'
miRNA:   3'- -CCCAUGUG-Gua-GAGCucaa-CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 33414 0.66 0.986992
Target:  5'- ---cGCACCGcCUCGGGcgucgGCgGCGCg -3'
miRNA:   3'- cccaUGUGGUaGAGCUCaa---CGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 45961 0.66 0.983635
Target:  5'- cGGGUGCugCuUCUgauaagCGuGgUGCCuGCGCg -3'
miRNA:   3'- -CCCAUGugGuAGA------GCuCaACGG-CGCG- -5'
30176 5' -53.9 NC_006273.1 + 46903 0.73 0.795946
Target:  5'- gGGGUGCGCgCGUCUccCGAGgccgaGgCGCGCu -3'
miRNA:   3'- -CCCAUGUG-GUAGA--GCUCaa---CgGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 49619 0.67 0.979659
Target:  5'- uGGUggGCGCCAgCUCGuAGaUGCaguCGCGCa -3'
miRNA:   3'- cCCA--UGUGGUaGAGC-UCaACG---GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 53772 0.68 0.956472
Target:  5'- -cGUGCACCGUCUgggcCGGGcaauccuggUGuuGCGCg -3'
miRNA:   3'- ccCAUGUGGUAGA----GCUCa--------ACggCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.