miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 5' -53.9 NC_006273.1 + 58204 0.68 0.956472
Target:  5'- ---cACACCGUCuccuccUCGAacacggUGCCGCGCg -3'
miRNA:   3'- cccaUGUGGUAG------AGCUca----ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 64743 0.66 0.989792
Target:  5'- uGGGUucauGCuGCCuAUCUaCGAGacgGCCGCGa -3'
miRNA:   3'- -CCCA----UG-UGG-UAGA-GCUCaa-CGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 68538 0.67 0.975007
Target:  5'- uGG-ACugCAUC-CGuccGGUggUGCCGCGCu -3'
miRNA:   3'- cCCaUGugGUAGaGC---UCA--ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 70905 0.71 0.868604
Target:  5'- cGGGUuucaGCGuCCGgcCUCGGGUUGCCuggacgccuggGCGCg -3'
miRNA:   3'- -CCCA----UGU-GGUa-GAGCUCAACGG-----------CGCG- -5'
30176 5' -53.9 NC_006273.1 + 70936 0.69 0.93519
Target:  5'- ---gACAUCGUCaUCGAGcgGCCGCGg -3'
miRNA:   3'- cccaUGUGGUAG-AGCUCaaCGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 72343 0.68 0.969624
Target:  5'- --cUGCACCGUCUCGc----CCGCGCu -3'
miRNA:   3'- cccAUGUGGUAGAGCucaacGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 80748 0.74 0.750308
Target:  5'- ---aACGCCGUCUCGucGUUGCCGC-Cg -3'
miRNA:   3'- cccaUGUGGUAGAGCu-CAACGGCGcG- -5'
30176 5' -53.9 NC_006273.1 + 82909 0.66 0.985387
Target:  5'- aGGUGCGCuCGgagcggCUgGAGgcgcaGCUGCGCg -3'
miRNA:   3'- cCCAUGUG-GUa-----GAgCUCaa---CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 84329 0.66 0.991003
Target:  5'- cGGGcUGCugguuuCCAUggccgaguacCgcagCGAGUUGCUGUGCa -3'
miRNA:   3'- -CCC-AUGu-----GGUA----------Ga---GCUCAACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 87905 0.68 0.966642
Target:  5'- cGGGcACGCCGaagcaaaUgGAGUUGCC-CGCg -3'
miRNA:   3'- -CCCaUGUGGUag-----AgCUCAACGGcGCG- -5'
30176 5' -53.9 NC_006273.1 + 90927 0.68 0.966642
Target:  5'- cGGGUacaacggcacgcGCACCGcCUCGcc--GCCGUGCa -3'
miRNA:   3'- -CCCA------------UGUGGUaGAGCucaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 92663 0.67 0.979659
Target:  5'- ---aGCACCGUCUCGcugUGCuuaCGCGCc -3'
miRNA:   3'- cccaUGUGGUAGAGCucaACG---GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 94368 0.71 0.86126
Target:  5'- uGGaGCACCAUC-CGGGgccguggGCCGgGCa -3'
miRNA:   3'- cCCaUGUGGUAGaGCUCaa-----CGGCgCG- -5'
30176 5' -53.9 NC_006273.1 + 100908 0.66 0.991003
Target:  5'- aGGUAC-CCGa--CGAGgcggcGCCGCGCu -3'
miRNA:   3'- cCCAUGuGGUagaGCUCaa---CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 101264 0.68 0.956472
Target:  5'- aGGUA-GCCAUCgcCGAGUgcGCgGCGCa -3'
miRNA:   3'- cCCAUgUGGUAGa-GCUCAa-CGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 101904 0.68 0.960071
Target:  5'- --cUGCACgGUCUcuugCGGGUUGCgGUGCg -3'
miRNA:   3'- cccAUGUGgUAGA----GCUCAACGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 103759 0.67 0.981728
Target:  5'- ---cGCGCCGguaCUCGAGcaaCCGCGCg -3'
miRNA:   3'- cccaUGUGGUa--GAGCUCaacGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 104100 0.68 0.963459
Target:  5'- uGGGU-CAUguUCUUGGGaaGCCGCGg -3'
miRNA:   3'- -CCCAuGUGguAGAGCUCaaCGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 112101 0.71 0.88268
Target:  5'- uGGaagGCGgCAUCUCGGG--GCCGCGUg -3'
miRNA:   3'- cCCa--UGUgGUAGAGCUCaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 113492 0.66 0.983635
Target:  5'- uGGGUucggAUGCCGUagccggcggCGGGUUGCCcgggggGCGCg -3'
miRNA:   3'- -CCCA----UGUGGUAga-------GCUCAACGG------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.