miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 5' -53.9 NC_006273.1 + 214060 0.67 0.979659
Target:  5'- cGGGUu--CCG-CUCGcGGUUGCgguCGCGCa -3'
miRNA:   3'- -CCCAuguGGUaGAGC-UCAACG---GCGCG- -5'
30176 5' -53.9 NC_006273.1 + 208057 0.69 0.930259
Target:  5'- uGGGUGacgaCAUCUCGAGgucaugugGCCGCu- -3'
miRNA:   3'- -CCCAUgug-GUAGAGCUCaa------CGGCGcg -5'
30176 5' -53.9 NC_006273.1 + 204725 0.68 0.963459
Target:  5'- aGGcGCGCCcgCUgCGAucugcgGUUGCCGaCGCg -3'
miRNA:   3'- cCCaUGUGGuaGA-GCU------CAACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 204337 0.73 0.804684
Target:  5'- gGGGUGCGCCGacCUUGAaauggGUCGCGCu -3'
miRNA:   3'- -CCCAUGUGGUa-GAGCUcaa--CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 198870 0.68 0.960071
Target:  5'- cGGUcCGCCgGUCUCGAcg-GaCCGCGCc -3'
miRNA:   3'- cCCAuGUGG-UAGAGCUcaaC-GGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 198635 0.69 0.930259
Target:  5'- uGGUGCaucccgACCAUCgggcCGAGcugUGCCGcCGCu -3'
miRNA:   3'- cCCAUG------UGGUAGa---GCUCa--ACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 197728 0.71 0.895908
Target:  5'- cGGGcucucGCGCCGUCaacagCGuGccuuUUGCCGCGCg -3'
miRNA:   3'- -CCCa----UGUGGUAGa----GCuC----AACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 197286 0.66 0.988458
Target:  5'- uGGGgcgcgagucgGCGCCcgCcgcCGAG--GCCGCGCg -3'
miRNA:   3'- -CCCa---------UGUGGuaGa--GCUCaaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 197176 0.7 0.902195
Target:  5'- cGGUuucCGCCGUCUCcggauGAGcgGCCGCGg -3'
miRNA:   3'- cCCAu--GUGGUAGAG-----CUCaaCGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 197124 0.71 0.875745
Target:  5'- cGGGUccgGCGgCGUCg-GGGaccgUGCCGCGCg -3'
miRNA:   3'- -CCCA---UGUgGUAGagCUCa---ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 196028 0.7 0.9251
Target:  5'- cGGGUaGCGCCGcCUCGucGUcguccaucgUGCCGCGg -3'
miRNA:   3'- -CCCA-UGUGGUaGAGCu-CA---------ACGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 195493 0.66 0.986992
Target:  5'- aGGGUGCGCg--CUCGGGgacccaGuCCGCGg -3'
miRNA:   3'- -CCCAUGUGguaGAGCUCaa----C-GGCGCg -5'
30176 5' -53.9 NC_006273.1 + 194164 0.66 0.988317
Target:  5'- cGGUgacacaaACAgCGUCUCGGGacGCCGCu- -3'
miRNA:   3'- cCCA-------UGUgGUAGAGCUCaaCGGCGcg -5'
30176 5' -53.9 NC_006273.1 + 188887 0.68 0.966642
Target:  5'- uGGGU-CAaCAUCUCGAGcaGCagGCGCc -3'
miRNA:   3'- -CCCAuGUgGUAGAGCUCaaCGg-CGCG- -5'
30176 5' -53.9 NC_006273.1 + 183753 0.66 0.990887
Target:  5'- cGGGUgcuguccGCGCCG-C-CGAGccUGCCGuCGCc -3'
miRNA:   3'- -CCCA-------UGUGGUaGaGCUCa-ACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 181666 0.68 0.963459
Target:  5'- cGGcagUGCCGUCUCGGGU--CCGUGCa -3'
miRNA:   3'- cCCau-GUGGUAGAGCUCAacGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 178717 0.67 0.981728
Target:  5'- uGGGUcCGCUA-CUCGuggcGUUGUCGaCGCu -3'
miRNA:   3'- -CCCAuGUGGUaGAGCu---CAACGGC-GCG- -5'
30176 5' -53.9 NC_006273.1 + 176922 0.73 0.813273
Target:  5'- cGGUGCGCgcuagCGUCgauuugugcaagUCGGGuUUGCCGCGCu -3'
miRNA:   3'- cCCAUGUG-----GUAG------------AGCUC-AACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 175604 0.72 0.853719
Target:  5'- cGGUGCGCCGUUUUG---UGCUGCGUc -3'
miRNA:   3'- cCCAUGUGGUAGAGCucaACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 171808 0.71 0.895908
Target:  5'- cGGGUACACCGcugaggugCUCGAGa-GUCGUGg -3'
miRNA:   3'- -CCCAUGUGGUa-------GAGCUCaaCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.