miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30176 5' -53.9 NC_006273.1 + 87905 0.68 0.966642
Target:  5'- cGGGcACGCCGaagcaaaUgGAGUUGCC-CGCg -3'
miRNA:   3'- -CCCaUGUGGUag-----AgCUCAACGGcGCG- -5'
30176 5' -53.9 NC_006273.1 + 58204 0.68 0.956472
Target:  5'- ---cACACCGUCuccuccUCGAacacggUGCCGCGCg -3'
miRNA:   3'- cccaUGUGGUAG------AGCUca----ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 133147 0.68 0.956472
Target:  5'- cGGGUGCuaagaagcuGCUcuugCUCGAcgUGCCGCGUc -3'
miRNA:   3'- -CCCAUG---------UGGua--GAGCUcaACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 101904 0.68 0.960071
Target:  5'- --cUGCACgGUCUcuugCGGGUUGCgGUGCg -3'
miRNA:   3'- cccAUGUGgUAGA----GCUCAACGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 198870 0.68 0.960071
Target:  5'- cGGUcCGCCgGUCUCGAcg-GaCCGCGCc -3'
miRNA:   3'- cCCAuGUGG-UAGAGCUcaaC-GGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 152595 0.68 0.962129
Target:  5'- aGGUccuGCGCCAgcgggugugUCUCG-GUggcccgcugcacgGCCGCGCg -3'
miRNA:   3'- cCCA---UGUGGU---------AGAGCuCAa------------CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 144068 0.68 0.962465
Target:  5'- cGGUACGCCAguagC-CGAGgacUuuaugacgcgcgugGCCGCGCu -3'
miRNA:   3'- cCCAUGUGGUa---GaGCUCa--A--------------CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 121847 0.68 0.963459
Target:  5'- uGGGgauguuCAgCAUCUUGAGcgGCaGCGCg -3'
miRNA:   3'- -CCCau----GUgGUAGAGCUCaaCGgCGCG- -5'
30176 5' -53.9 NC_006273.1 + 181666 0.68 0.963459
Target:  5'- cGGcagUGCCGUCUCGGGU--CCGUGCa -3'
miRNA:   3'- cCCau-GUGGUAGAGCUCAacGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 53772 0.68 0.956472
Target:  5'- -cGUGCACCGUCUgggcCGGGcaauccuggUGuuGCGCg -3'
miRNA:   3'- ccCAUGUGGUAGA----GCUCa--------ACggCGCG- -5'
30176 5' -53.9 NC_006273.1 + 139415 0.69 0.948625
Target:  5'- gGGGUGCAUCAUCUgGuAGcgcUUGCggcacaGCGCc -3'
miRNA:   3'- -CCCAUGUGGUAGAgC-UC---AACGg-----CGCG- -5'
30176 5' -53.9 NC_006273.1 + 70936 0.69 0.93519
Target:  5'- ---gACAUCGUCaUCGAGcgGCCGCGg -3'
miRNA:   3'- cccaUGUGGUAG-AGCUCaaCGGCGCg -5'
30176 5' -53.9 NC_006273.1 + 150216 0.75 0.672583
Target:  5'- uGGGUGCGCUcgCUgGcGGUUGaCGCGCa -3'
miRNA:   3'- -CCCAUGUGGuaGAgC-UCAACgGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 31238 0.74 0.76892
Target:  5'- cGGGgcgACACgGUacgcCGGGUaGCCGCGCa -3'
miRNA:   3'- -CCCa--UGUGgUAga--GCUCAaCGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 46903 0.73 0.795946
Target:  5'- gGGGUGCGCgCGUCUccCGAGgccgaGgCGCGCu -3'
miRNA:   3'- -CCCAUGUG-GUAGA--GCUCaa---CgGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 204337 0.73 0.804684
Target:  5'- gGGGUGCGCCGacCUUGAaauggGUCGCGCu -3'
miRNA:   3'- -CCCAUGUGGUa-GAGCUcaa--CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 33072 0.72 0.845986
Target:  5'- cGGGUGCGCgCcugCUCGucaucGCCGCGCc -3'
miRNA:   3'- -CCCAUGUG-Gua-GAGCucaa-CGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 94368 0.71 0.86126
Target:  5'- uGGaGCACCAUC-CGGGgccguggGCCGgGCa -3'
miRNA:   3'- cCCaUGUGGUAGaGCUCaa-----CGGCgCG- -5'
30176 5' -53.9 NC_006273.1 + 197124 0.71 0.875745
Target:  5'- cGGGUccgGCGgCGUCg-GGGaccgUGCCGCGCg -3'
miRNA:   3'- -CCCA---UGUgGUAGagCUCa---ACGGCGCG- -5'
30176 5' -53.9 NC_006273.1 + 123044 0.7 0.902195
Target:  5'- aGGGUcgucGCACCGUUUCGcGUcgcaGCCGCagGCg -3'
miRNA:   3'- -CCCA----UGUGGUAGAGCuCAa---CGGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.