miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 3' -57.9 NC_006273.1 + 158213 0.66 0.929089
Target:  5'- gGUCGUGCAgcgugaggcgcgggCGCgCGUCggCCGGCGaCGg -3'
miRNA:   3'- -CGGCGCGUa-------------GUG-GCAGuaGGUCGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 196550 0.66 0.927078
Target:  5'- cCCGCGCGcgaCGCUGcugccUCAgCCGGCGCu -3'
miRNA:   3'- cGGCGCGUa--GUGGC-----AGUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 55018 0.66 0.927078
Target:  5'- --gGCGCGUCGUCGUgAUCcCGGuCGCGg -3'
miRNA:   3'- cggCGCGUAGUGGCAgUAG-GUC-GCGC- -5'
30177 3' -57.9 NC_006273.1 + 127500 0.66 0.927078
Target:  5'- uCgGCG-AUCAaCGUCA-CCAGCGCGu -3'
miRNA:   3'- cGgCGCgUAGUgGCAGUaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 117764 0.66 0.927078
Target:  5'- cCCGCcacCAUCACCGgccuauuaCcgUCGGCGCGa -3'
miRNA:   3'- cGGCGc--GUAGUGGCa-------GuaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 1657 0.66 0.927078
Target:  5'- cCCGCGCGcgaCGCUGcugccUCAgCCGGCGCu -3'
miRNA:   3'- cGGCGCGUa--GUGGC-----AGUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 216525 0.66 0.927078
Target:  5'- uGCCaGCGCAgCA-CGUCucuuUUCAGCGUGu -3'
miRNA:   3'- -CGG-CGCGUaGUgGCAGu---AGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 177133 0.66 0.92657
Target:  5'- gGUgGCGCAUCuguggggcgugacGCCGUCAgugugggCUucGCGCGg -3'
miRNA:   3'- -CGgCGCGUAG-------------UGGCAGUa------GGu-CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 94545 0.66 0.925547
Target:  5'- gGCCGCGCAcCGCCuGUaaCAccucucugagacggUCCAGCGa- -3'
miRNA:   3'- -CGGCGCGUaGUGG-CA--GU--------------AGGUCGCgc -5'
30177 3' -57.9 NC_006273.1 + 100447 0.66 0.921898
Target:  5'- gGgCGCGCGUCACgCGgCG-CCGGUGuCGg -3'
miRNA:   3'- -CgGCGCGUAGUG-GCaGUaGGUCGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 124980 0.66 0.921898
Target:  5'- cGCCGCaucaaCGUCAgCGUCAUauuGCGCa -3'
miRNA:   3'- -CGGCGc----GUAGUgGCAGUAgguCGCGc -5'
30177 3' -57.9 NC_006273.1 + 184118 0.66 0.921898
Target:  5'- uGCCGCGguUUuuUGUCGcgUCCAcgggcuGCGCGg -3'
miRNA:   3'- -CGGCGCguAGugGCAGU--AGGU------CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 23371 0.66 0.921898
Target:  5'- gGCUGCGCAUUcgccuGCCG-CAUcgauaCCAGCGg- -3'
miRNA:   3'- -CGGCGCGUAG-----UGGCaGUA-----GGUCGCgc -5'
30177 3' -57.9 NC_006273.1 + 196165 0.66 0.921898
Target:  5'- uGCCGCGUGaCGCUGaccCGUCCaaagGGCGCc -3'
miRNA:   3'- -CGGCGCGUaGUGGCa--GUAGG----UCGCGc -5'
30177 3' -57.9 NC_006273.1 + 16865 0.66 0.921898
Target:  5'- -aCGUGCGUCGCCGcuacgaacacggUC-UgCGGCGCGc -3'
miRNA:   3'- cgGCGCGUAGUGGC------------AGuAgGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 99295 0.66 0.921898
Target:  5'- cGCCGCccacgGCGUCcucggcgUCGUCGgaggCCGGUGCGu -3'
miRNA:   3'- -CGGCG-----CGUAGu------GGCAGUa---GGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 155490 0.66 0.921368
Target:  5'- cGCCGCccuuGCaAUCugCGcCGUCCAGUcaggacgGCGu -3'
miRNA:   3'- -CGGCG----CG-UAGugGCaGUAGGUCG-------CGC- -5'
30177 3' -57.9 NC_006273.1 + 190582 0.66 0.916501
Target:  5'- gGCUGCcgaGUCA-CGUCcgCCGGCGCc -3'
miRNA:   3'- -CGGCGcg-UAGUgGCAGuaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 153520 0.66 0.916501
Target:  5'- cGCCGCGCAgaACC-----UCAGCGCGa -3'
miRNA:   3'- -CGGCGCGUagUGGcaguaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 122587 0.66 0.916501
Target:  5'- cGCCaGuCGCAUgggcaGCagGUCcUCCAGCGCGa -3'
miRNA:   3'- -CGG-C-GCGUAg----UGg-CAGuAGGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.