miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 3' -57.9 NC_006273.1 + 117764 0.66 0.927078
Target:  5'- cCCGCcacCAUCACCGgccuauuaCcgUCGGCGCGa -3'
miRNA:   3'- cGGCGc--GUAGUGGCa-------GuaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 197759 0.66 0.904462
Target:  5'- uGCCGCGCggGUCGcguguugacggacCCGgagccCAUCCAGaGCGa -3'
miRNA:   3'- -CGGCGCG--UAGU-------------GGCa----GUAGGUCgCGC- -5'
30177 3' -57.9 NC_006273.1 + 158213 0.66 0.929089
Target:  5'- gGUCGUGCAgcgugaggcgcgggCGCgCGUCggCCGGCGaCGg -3'
miRNA:   3'- -CGGCGCGUa-------------GUG-GCAGuaGGUCGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 124980 0.66 0.921898
Target:  5'- cGCCGCaucaaCGUCAgCGUCAUauuGCGCa -3'
miRNA:   3'- -CGGCGc----GUAGUgGCAGUAgguCGCGc -5'
30177 3' -57.9 NC_006273.1 + 153520 0.66 0.916501
Target:  5'- cGCCGCGCAgaACC-----UCAGCGCGa -3'
miRNA:   3'- -CGGCGCGUagUGGcaguaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 190582 0.66 0.916501
Target:  5'- gGCUGCcgaGUCA-CGUCcgCCGGCGCc -3'
miRNA:   3'- -CGGCGcg-UAGUgGCAGuaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 227089 0.66 0.904462
Target:  5'- cGCCGCGUcuuggccugcaugAUCAUCGUCAUCaugauCGCc -3'
miRNA:   3'- -CGGCGCG-------------UAGUGGCAGUAGguc--GCGc -5'
30177 3' -57.9 NC_006273.1 + 71893 0.66 0.910887
Target:  5'- uGCCGCGCAgggCAgaaugaCGUCGaaagCCAGC-CGg -3'
miRNA:   3'- -CGGCGCGUa--GUg-----GCAGUa---GGUCGcGC- -5'
30177 3' -57.9 NC_006273.1 + 153423 0.66 0.910887
Target:  5'- cGCUGCuCGUCACCGgCAcggCgGGCGCc -3'
miRNA:   3'- -CGGCGcGUAGUGGCaGUa--GgUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 122587 0.66 0.916501
Target:  5'- cGCCaGuCGCAUgggcaGCagGUCcUCCAGCGCGa -3'
miRNA:   3'- -CGG-C-GCGUAg----UGg-CAGuAGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 31413 0.66 0.905057
Target:  5'- cGCCGCGgcUCACCGagGUcuaCCAGaCGCu -3'
miRNA:   3'- -CGGCGCguAGUGGCagUA---GGUC-GCGc -5'
30177 3' -57.9 NC_006273.1 + 216525 0.66 0.927078
Target:  5'- uGCCaGCGCAgCA-CGUCucuuUUCAGCGUGu -3'
miRNA:   3'- -CGG-CGCGUaGUgGCAGu---AGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 86722 0.66 0.905057
Target:  5'- aGCUGCGCGcagaccUCcagGCCGgCcUCCGGCGCc -3'
miRNA:   3'- -CGGCGCGU------AG---UGGCaGuAGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 125796 0.66 0.910887
Target:  5'- gGCCGCGaaaGUCugUG-CGUCCGcuuCGCGa -3'
miRNA:   3'- -CGGCGCg--UAGugGCaGUAGGUc--GCGC- -5'
30177 3' -57.9 NC_006273.1 + 23371 0.66 0.921898
Target:  5'- gGCUGCGCAUUcgccuGCCG-CAUcgauaCCAGCGg- -3'
miRNA:   3'- -CGGCGCGUAG-----UGGCaGUA-----GGUCGCgc -5'
30177 3' -57.9 NC_006273.1 + 201200 0.66 0.904462
Target:  5'- aCCGCGC--CGCCGUUuuuuUCCAcgccacguuuaugGCGCGa -3'
miRNA:   3'- cGGCGCGuaGUGGCAGu---AGGU-------------CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 55018 0.66 0.927078
Target:  5'- --gGCGCGUCGUCGUgAUCcCGGuCGCGg -3'
miRNA:   3'- cggCGCGUAGUGGCAgUAG-GUC-GCGC- -5'
30177 3' -57.9 NC_006273.1 + 149720 0.66 0.910887
Target:  5'- gGCCGUGgGUCauguccuggGCCGgcugCCGGCGCu -3'
miRNA:   3'- -CGGCGCgUAG---------UGGCaguaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 127500 0.66 0.927078
Target:  5'- uCgGCG-AUCAaCGUCA-CCAGCGCGu -3'
miRNA:   3'- cGgCGCgUAGUgGCAGUaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 196550 0.66 0.927078
Target:  5'- cCCGCGCGcgaCGCUGcugccUCAgCCGGCGCu -3'
miRNA:   3'- cGGCGCGUa--GUGGC-----AGUaGGUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.