miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 3' -57.9 NC_006273.1 + 165273 1.11 0.002358
Target:  5'- aGCCGCGCAUCACCGUCAUCCAGCGCGg -3'
miRNA:   3'- -CGGCGCGUAGUGGCAGUAGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 186111 0.81 0.234139
Target:  5'- uGCCGCGCAUCACCuguuaccaccaGUUGUUgGGCGCGc -3'
miRNA:   3'- -CGGCGCGUAGUGG-----------CAGUAGgUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 191405 0.76 0.396238
Target:  5'- cGUCGC-CGUaGCCGUCGUCgAGCGCGa -3'
miRNA:   3'- -CGGCGcGUAgUGGCAGUAGgUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 70927 0.76 0.396238
Target:  5'- cGCCGCGCcgaCAUCGUCAUCgAGCGg- -3'
miRNA:   3'- -CGGCGCGua-GUGGCAGUAGgUCGCgc -5'
30177 3' -57.9 NC_006273.1 + 111910 0.76 0.404382
Target:  5'- aGCCGCGCAUCACacggCGUUacacgacuGUCUGGCGCu -3'
miRNA:   3'- -CGGCGCGUAGUG----GCAG--------UAGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 213841 0.76 0.420982
Target:  5'- cGCCGCGC--CGCCGUCcucgaaacgCCAGCGCc -3'
miRNA:   3'- -CGGCGCGuaGUGGCAGua-------GGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 189890 0.76 0.429435
Target:  5'- cGCCGgGCAUCGCCGUCggCU-GCGaCGg -3'
miRNA:   3'- -CGGCgCGUAGUGGCAGuaGGuCGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 53763 0.76 0.429435
Target:  5'- cGCCGCGCAcgugCACCGUCugggccgggcaAUCCugguguuGCGCGc -3'
miRNA:   3'- -CGGCGCGUa---GUGGCAG-----------UAGGu------CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 94118 0.75 0.473136
Target:  5'- gGCCacaCGCAUCACCGUCAaagCCugcuGCGUGg -3'
miRNA:   3'- -CGGc--GCGUAGUGGCAGUa--GGu---CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 233457 0.74 0.50965
Target:  5'- aCCGCGCGggcagCACCG-CGcCCAGCGCc -3'
miRNA:   3'- cGGCGCGUa----GUGGCaGUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 38564 0.74 0.50965
Target:  5'- aCCGCGCGggcagCACCG-CGcCCAGCGCc -3'
miRNA:   3'- cGGCGCGUa----GUGGCaGUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 197171 0.74 0.537791
Target:  5'- cGCCGCGguUucCGCCGUC-UCCGGaugaGCGg -3'
miRNA:   3'- -CGGCGCguA--GUGGCAGuAGGUCg---CGC- -5'
30177 3' -57.9 NC_006273.1 + 124402 0.73 0.547292
Target:  5'- aGCCGCGCgAUC-UCGUCGUCgGGCGaCa -3'
miRNA:   3'- -CGGCGCG-UAGuGGCAGUAGgUCGC-Gc -5'
30177 3' -57.9 NC_006273.1 + 170663 0.73 0.548245
Target:  5'- aGCCGCGCGUCcagacgcgcGCCcucuuccaugauggCGUCCAGCGCc -3'
miRNA:   3'- -CGGCGCGUAG---------UGGca------------GUAGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 99817 0.73 0.556845
Target:  5'- cGCCGCugaGCAcggCGCugaugauguugaCGUCGUCCAGUGCGg -3'
miRNA:   3'- -CGGCG---CGUa--GUG------------GCAGUAGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 123164 0.73 0.556845
Target:  5'- cGCCGCGCAUUGCCaccgccgcGUCcUCCAGCa-- -3'
miRNA:   3'- -CGGCGCGUAGUGG--------CAGuAGGUCGcgc -5'
30177 3' -57.9 NC_006273.1 + 91273 0.73 0.556845
Target:  5'- uGUCGCGCAgacCcUCGUCGcgagCCAGCGCGg -3'
miRNA:   3'- -CGGCGCGUa--GuGGCAGUa---GGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 132388 0.73 0.566446
Target:  5'- gGCUGCGCGaCGgCGUCuccgGUCUGGCGCGa -3'
miRNA:   3'- -CGGCGCGUaGUgGCAG----UAGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 161004 0.73 0.576089
Target:  5'- aGCUGCGCGUCACCGaCG-CCGGCc-- -3'
miRNA:   3'- -CGGCGCGUAGUGGCaGUaGGUCGcgc -5'
30177 3' -57.9 NC_006273.1 + 151238 0.73 0.576089
Target:  5'- gGCCGCGCcgCuccucgucuGCCGUgAUCaagCGGCGCGg -3'
miRNA:   3'- -CGGCGCGuaG---------UGGCAgUAG---GUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.