Results 21 - 40 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30177 | 3' | -57.9 | NC_006273.1 | + | 233662 | 0.73 | 0.591591 |
Target: 5'- cGCCgGCGCAgcucccguccgagCGCCGUCGccUCCucGGCGCGc -3' miRNA: 3'- -CGG-CGCGUa------------GUGGCAGU--AGG--UCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 38770 | 0.73 | 0.591591 |
Target: 5'- cGCCgGCGCAgcucccguccgagCGCCGUCGccUCCucGGCGCGc -3' miRNA: 3'- -CGG-CGCGUa------------GUGGCAGU--AGG--UCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 188913 | 0.72 | 0.605213 |
Target: 5'- gGCCuGgGCGUCACCGgcggUGUCCAGC-CGa -3' miRNA: 3'- -CGG-CgCGUAGUGGCa---GUAGGUCGcGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 119996 | 0.72 | 0.605213 |
Target: 5'- cGCCGcCGCucauaaugccGUCACCGUCGcgUCCGaCGCGa -3' miRNA: 3'- -CGGC-GCG----------UAGUGGCAGU--AGGUcGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 136953 | 0.72 | 0.614966 |
Target: 5'- gGgCGCGCAUCGCCGUCGagUAcGUGCu -3' miRNA: 3'- -CgGCGCGUAGUGGCAGUagGU-CGCGc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 39152 | 0.72 | 0.614966 |
Target: 5'- cGUCGCGCccaCGCCGuUCAUCUggcuGCGCGg -3' miRNA: 3'- -CGGCGCGua-GUGGC-AGUAGGu---CGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 164454 | 0.72 | 0.614966 |
Target: 5'- cGCCGCGUcgCGCCcaggCGUCCAG-GCa -3' miRNA: 3'- -CGGCGCGuaGUGGca--GUAGGUCgCGc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 234045 | 0.72 | 0.614966 |
Target: 5'- cGUCGCGCccaCGCCGuUCAUCUggcuGCGCGg -3' miRNA: 3'- -CGGCGCGua-GUGGC-AGUAGGu---CGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 187345 | 0.72 | 0.614966 |
Target: 5'- aGCgGCGcCGUCACCGcCAugUCCGGCGg- -3' miRNA: 3'- -CGgCGC-GUAGUGGCaGU--AGGUCGCgc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 144476 | 0.72 | 0.62473 |
Target: 5'- cGCCgGCGUcUCGCCGggCAUCCAGUuCGg -3' miRNA: 3'- -CGG-CGCGuAGUGGCa-GUAGGUCGcGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 101373 | 0.72 | 0.62473 |
Target: 5'- gGCCguGCGCAUCGCCugccUCAUCCgacagAGCGUGc -3' miRNA: 3'- -CGG--CGCGUAGUGGc---AGUAGG-----UCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 93636 | 0.72 | 0.6345 |
Target: 5'- uUCGCGCAUcCACUGgcg-CCGGCGCGc -3' miRNA: 3'- cGGCGCGUA-GUGGCaguaGGUCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 173216 | 0.72 | 0.643291 |
Target: 5'- gGCCGCGCcUCcguggcaGCCGUU-UCCAGCuGCGu -3' miRNA: 3'- -CGGCGCGuAG-------UGGCAGuAGGUCG-CGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 102950 | 0.72 | 0.644268 |
Target: 5'- uGCuCGCGCAccgUACCGUCGUCCAuuaacaacGcCGCGu -3' miRNA: 3'- -CG-GCGCGUa--GUGGCAGUAGGU--------C-GCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 1247 | 0.72 | 0.644268 |
Target: 5'- gGCCGCGCcaugCGCaaGUgGUCgCAGCGCGa -3' miRNA: 3'- -CGGCGCGua--GUGg-CAgUAG-GUCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 196140 | 0.72 | 0.644268 |
Target: 5'- gGCCGCGCcaugCGCaaGUgGUCgCAGCGCGa -3' miRNA: 3'- -CGGCGCGua--GUGg-CAgUAG-GUCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 88693 | 0.72 | 0.654027 |
Target: 5'- uGCgCGUGguUCugCGUCGUUaAGCGCGu -3' miRNA: 3'- -CG-GCGCguAGugGCAGUAGgUCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 72394 | 0.72 | 0.654027 |
Target: 5'- cGCCGCaGCugcCGCCGUCGagccUCCuccGCGCGu -3' miRNA: 3'- -CGGCG-CGua-GUGGCAGU----AGGu--CGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 137194 | 0.72 | 0.654027 |
Target: 5'- uGCCGCuCAgcgaGCuCGUCG-CCAGCGCGa -3' miRNA: 3'- -CGGCGcGUag--UG-GCAGUaGGUCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 64955 | 0.71 | 0.667661 |
Target: 5'- aCCGCGUcccaccuacguacucGUCACCGUCAaCUcguuGGCGCGc -3' miRNA: 3'- cGGCGCG---------------UAGUGGCAGUaGG----UCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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