Results 21 - 40 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30177 | 3' | -57.9 | NC_006273.1 | + | 122587 | 0.66 | 0.916501 |
Target: 5'- cGCCaGuCGCAUgggcaGCagGUCcUCCAGCGCGa -3' miRNA: 3'- -CGG-C-GCGUAg----UGg-CAGuAGGUCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 184562 | 0.66 | 0.915949 |
Target: 5'- aGCCGCGauaucaaCGUCACCGagGUCUAcggggagguuGCGUGu -3' miRNA: 3'- -CGGCGC-------GUAGUGGCagUAGGU----------CGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 16319 | 0.66 | 0.910887 |
Target: 5'- uGCUGUGCG-CG-CGUCAUCUggacgaacuGGCGCGu -3' miRNA: 3'- -CGGCGCGUaGUgGCAGUAGG---------UCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 42511 | 0.66 | 0.910887 |
Target: 5'- gGCCGa--GUCGCCGUUuUCCAcgGCGUGc -3' miRNA: 3'- -CGGCgcgUAGUGGCAGuAGGU--CGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 83316 | 0.66 | 0.910887 |
Target: 5'- cCCGCGCGUgGuCCGgguggacCCGGCGUGg -3' miRNA: 3'- cGGCGCGUAgU-GGCagua---GGUCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 71893 | 0.66 | 0.910887 |
Target: 5'- uGCCGCGCAgggCAgaaugaCGUCGaaagCCAGC-CGg -3' miRNA: 3'- -CGGCGCGUa--GUg-----GCAGUa---GGUCGcGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 149720 | 0.66 | 0.910887 |
Target: 5'- gGCCGUGgGUCauguccuggGCCGgcugCCGGCGCu -3' miRNA: 3'- -CGGCGCgUAG---------UGGCaguaGGUCGCGc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 153423 | 0.66 | 0.910887 |
Target: 5'- cGCUGCuCGUCACCGgCAcggCgGGCGCc -3' miRNA: 3'- -CGGCGcGUAGUGGCaGUa--GgUCGCGc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 125796 | 0.66 | 0.910887 |
Target: 5'- gGCCGCGaaaGUCugUG-CGUCCGcuuCGCGa -3' miRNA: 3'- -CGGCGCg--UAGugGCaGUAGGUc--GCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 128535 | 0.66 | 0.910887 |
Target: 5'- uGCCGCGC-UC-CCGUU-UUCAGCGa- -3' miRNA: 3'- -CGGCGCGuAGuGGCAGuAGGUCGCgc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 84128 | 0.66 | 0.907414 |
Target: 5'- uCCGCGCcgCGCCGcuUgAUCacggcagacgaggagCGGCGCGg -3' miRNA: 3'- cGGCGCGuaGUGGC--AgUAG---------------GUCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 215018 | 0.66 | 0.905057 |
Target: 5'- aCCGcCGgGUCGCgGUCcgCCGGUGUu -3' miRNA: 3'- cGGC-GCgUAGUGgCAGuaGGUCGCGc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 187900 | 0.66 | 0.905057 |
Target: 5'- cUCGCGCGgcUCGCCGUCGUUCuccUGCu -3' miRNA: 3'- cGGCGCGU--AGUGGCAGUAGGuc-GCGc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 161190 | 0.66 | 0.905057 |
Target: 5'- uGCgaGCGCccGUCAagcUCGUCucgCCGGCGCGc -3' miRNA: 3'- -CGg-CGCG--UAGU---GGCAGua-GGUCGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 31413 | 0.66 | 0.905057 |
Target: 5'- cGCCGCGgcUCACCGagGUcuaCCAGaCGCu -3' miRNA: 3'- -CGGCGCguAGUGGCagUA---GGUC-GCGc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 102500 | 0.66 | 0.905057 |
Target: 5'- cGCCGCcgagauucgucGCugCACCGUagugaucacaaCGUCCGGCGCc -3' miRNA: 3'- -CGGCG-----------CGuaGUGGCA-----------GUAGGUCGCGc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 86722 | 0.66 | 0.905057 |
Target: 5'- aGCUGCGCGcagaccUCcagGCCGgCcUCCGGCGCc -3' miRNA: 3'- -CGGCGCGU------AG---UGGCaGuAGGUCGCGc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 201200 | 0.66 | 0.904462 |
Target: 5'- aCCGCGC--CGCCGUUuuuuUCCAcgccacguuuaugGCGCGa -3' miRNA: 3'- cGGCGCGuaGUGGCAGu---AGGU-------------CGCGC- -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 227089 | 0.66 | 0.904462 |
Target: 5'- cGCCGCGUcuuggccugcaugAUCAUCGUCAUCaugauCGCc -3' miRNA: 3'- -CGGCGCG-------------UAGUGGCAGUAGguc--GCGc -5' |
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30177 | 3' | -57.9 | NC_006273.1 | + | 197759 | 0.66 | 0.904462 |
Target: 5'- uGCCGCGCggGUCGcguguugacggacCCGgagccCAUCCAGaGCGa -3' miRNA: 3'- -CGGCGCG--UAGU-------------GGCa----GUAGGUCgCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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