miRNA display CGI


Results 41 - 60 of 210 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 3' -57.9 NC_006273.1 + 165210 0.67 0.899014
Target:  5'- aGCCGCGg--CACagGUCGUCCA-CGCa -3'
miRNA:   3'- -CGGCGCguaGUGg-CAGUAGGUcGCGc -5'
30177 3' -57.9 NC_006273.1 + 114788 0.67 0.899014
Target:  5'- cGCUGCGCAacccaaacgUCGCCGcCA-CCGGCa-- -3'
miRNA:   3'- -CGGCGCGU---------AGUGGCaGUaGGUCGcgc -5'
30177 3' -57.9 NC_006273.1 + 189003 0.67 0.899014
Target:  5'- cGCgGCGCGgguaUCGgCGUCGggggCCuGUGCGa -3'
miRNA:   3'- -CGgCGCGU----AGUgGCAGUa---GGuCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 204604 0.67 0.899014
Target:  5'- cGCCGCuGCugcuGUUAUCGUCGccaccgccgCCGGCGCc -3'
miRNA:   3'- -CGGCG-CG----UAGUGGCAGUa--------GGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 33366 0.67 0.899014
Target:  5'- uGCgGCGCGUCcCCGU-GUCgCAGCGa- -3'
miRNA:   3'- -CGgCGCGUAGuGGCAgUAG-GUCGCgc -5'
30177 3' -57.9 NC_006273.1 + 40338 0.67 0.899014
Target:  5'- gGCgGCG-AUCcCCGUCGagCGGCGUGa -3'
miRNA:   3'- -CGgCGCgUAGuGGCAGUagGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 21698 0.67 0.89276
Target:  5'- uGCCaGC-CGUCGCCG-CAggccuuugUCGGCGCGg -3'
miRNA:   3'- -CGG-CGcGUAGUGGCaGUa-------GGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 91180 0.67 0.89276
Target:  5'- cGCCGUGCcggucgucgCACCGcUCggCCAcGCGCu -3'
miRNA:   3'- -CGGCGCGua-------GUGGC-AGuaGGU-CGCGc -5'
30177 3' -57.9 NC_006273.1 + 115926 0.67 0.89276
Target:  5'- uGCacaaaGCGCGUCAgCaGUCcgCCgcucaAGCGCGg -3'
miRNA:   3'- -CGg----CGCGUAGUgG-CAGuaGG-----UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 118581 0.67 0.89276
Target:  5'- aGCCcgaaaGCGaCGUCGCggccuccaCGUCGUCgCAGCGCc -3'
miRNA:   3'- -CGG-----CGC-GUAGUG--------GCAGUAG-GUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 111962 0.67 0.89276
Target:  5'- uGCCGCGCgGUgGCgGUCAagUCUggAGCGUa -3'
miRNA:   3'- -CGGCGCG-UAgUGgCAGU--AGG--UCGCGc -5'
30177 3' -57.9 NC_006273.1 + 87504 0.67 0.89276
Target:  5'- cGCCGaCGCgaauGUCGgaGUUugCCAGCGCGg -3'
miRNA:   3'- -CGGC-GCG----UAGUggCAGuaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 75309 0.67 0.89276
Target:  5'- cCCGCcaacCGUUACCGUCAcuacgaauUCCAGaCGCu -3'
miRNA:   3'- cGGCGc---GUAGUGGCAGU--------AGGUC-GCGc -5'
30177 3' -57.9 NC_006273.1 + 57696 0.67 0.89276
Target:  5'- aGCCGCaGCGcCAgCGUCGgcggcUCCgagaGGCGCGu -3'
miRNA:   3'- -CGGCG-CGUaGUgGCAGU-----AGG----UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 104550 0.67 0.89276
Target:  5'- cCCGCGC-UCGUCGUCGgg-AGCGCGg -3'
miRNA:   3'- cGGCGCGuAGUGGCAGUaggUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 164707 0.67 0.892123
Target:  5'- uGCCGCGCGcccucCACCG-CcgCCAccgugucGCGCa -3'
miRNA:   3'- -CGGCGCGUa----GUGGCaGuaGGU-------CGCGc -5'
30177 3' -57.9 NC_006273.1 + 87452 0.67 0.890842
Target:  5'- gGCCGCGCcgacgcucAUCGgCGUCcGUagucacggccgaggCCAGCGCa -3'
miRNA:   3'- -CGGCGCG--------UAGUgGCAG-UA--------------GGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 192636 0.67 0.886953
Target:  5'- cGCgGCGUAgcUCGCCGUCGcuaugcggcucgucgCCguguGGCGCGg -3'
miRNA:   3'- -CGgCGCGU--AGUGGCAGUa--------------GG----UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 101334 0.67 0.886297
Target:  5'- aCUGCGUAUCGCCGUggagggcaacacCAaCCAG-GCGg -3'
miRNA:   3'- cGGCGCGUAGUGGCA------------GUaGGUCgCGC- -5'
30177 3' -57.9 NC_006273.1 + 178448 0.67 0.886297
Target:  5'- cGCCGUGgAgaauuuucUCACCGagGaaccuuUCCAGCGUGg -3'
miRNA:   3'- -CGGCGCgU--------AGUGGCagU------AGGUCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.