miRNA display CGI


Results 1 - 20 of 210 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 3' -57.9 NC_006273.1 + 169 0.69 0.766809
Target:  5'- -aCGCGCGUCugUGUCuguuugaGUCCccaggggacggcAGCGCGg -3'
miRNA:   3'- cgGCGCGUAGugGCAG-------UAGG------------UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 532 0.67 0.87963
Target:  5'- cGCCGCGCccCcgacacaccccgACCG-CcgCCGGUGCGg -3'
miRNA:   3'- -CGGCGCGuaG------------UGGCaGuaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 735 0.69 0.78549
Target:  5'- --aGCGCGUCGgCGUCc-UCAGCGCGu -3'
miRNA:   3'- cggCGCGUAGUgGCAGuaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 1247 0.72 0.644268
Target:  5'- gGCCGCGCcaugCGCaaGUgGUCgCAGCGCGa -3'
miRNA:   3'- -CGGCGCGua--GUGg-CAgUAG-GUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 1657 0.66 0.927078
Target:  5'- cCCGCGCGcgaCGCUGcugccUCAgCCGGCGCu -3'
miRNA:   3'- cGGCGCGUa--GUGGC-----AGUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 15339 0.67 0.865698
Target:  5'- -aCGCGUAUggaaCACCGUCAUCU-GUGCc -3'
miRNA:   3'- cgGCGCGUA----GUGGCAGUAGGuCGCGc -5'
30177 3' -57.9 NC_006273.1 + 16319 0.66 0.910887
Target:  5'- uGCUGUGCG-CG-CGUCAUCUggacgaacuGGCGCGu -3'
miRNA:   3'- -CGGCGCGUaGUgGCAGUAGG---------UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 16436 0.69 0.802768
Target:  5'- uGCUGCuGCGUCACgGUCAUgacaCCGaCGCGu -3'
miRNA:   3'- -CGGCG-CGUAGUGgCAGUA----GGUcGCGC- -5'
30177 3' -57.9 NC_006273.1 + 16865 0.66 0.921898
Target:  5'- -aCGUGCGUCGCCGcuacgaacacggUC-UgCGGCGCGc -3'
miRNA:   3'- cgGCGCGUAGUGGC------------AGuAgGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 17172 0.68 0.851
Target:  5'- gGCCGCGCcaUGCCgGUCGUCCGcCGuCGg -3'
miRNA:   3'- -CGGCGCGuaGUGG-CAGUAGGUcGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 19955 0.69 0.76771
Target:  5'- gGCCGUGagacCGCCGUCAUCaCAGCa-- -3'
miRNA:   3'- -CGGCGCgua-GUGGCAGUAG-GUCGcgc -5'
30177 3' -57.9 NC_006273.1 + 20845 0.67 0.87963
Target:  5'- aGCCGCagGUCACU--UAUCCAGCGgGa -3'
miRNA:   3'- -CGGCGcgUAGUGGcaGUAGGUCGCgC- -5'
30177 3' -57.9 NC_006273.1 + 21337 0.7 0.758651
Target:  5'- aGCCGCGCuuGUCGCCaugcuucauGUCGUCCcGCuaGa -3'
miRNA:   3'- -CGGCGCG--UAGUGG---------CAGUAGGuCGcgC- -5'
30177 3' -57.9 NC_006273.1 + 21698 0.67 0.89276
Target:  5'- uGCCaGC-CGUCGCCG-CAggccuuugUCGGCGCGg -3'
miRNA:   3'- -CGG-CGcGUAGUGGCaGUa-------GGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 23371 0.66 0.921898
Target:  5'- gGCUGCGCAUUcgccuGCCG-CAUcgauaCCAGCGg- -3'
miRNA:   3'- -CGGCGCGUAG-----UGGCaGUA-----GGUCGCgc -5'
30177 3' -57.9 NC_006273.1 + 24680 0.69 0.776659
Target:  5'- cCCGCGCu--GCCGUCGUCCguuccgacagcuGGUGCu -3'
miRNA:   3'- cGGCGCGuagUGGCAGUAGG------------UCGCGc -5'
30177 3' -57.9 NC_006273.1 + 28862 0.71 0.683179
Target:  5'- cGCUGUGCAUC-CCGUCcUUCGucGCGCa -3'
miRNA:   3'- -CGGCGCGUAGuGGCAGuAGGU--CGCGc -5'
30177 3' -57.9 NC_006273.1 + 31413 0.66 0.905057
Target:  5'- cGCCGCGgcUCACCGagGUcuaCCAGaCGCu -3'
miRNA:   3'- -CGGCGCguAGUGGCagUA---GGUC-GCGc -5'
30177 3' -57.9 NC_006273.1 + 33366 0.67 0.899014
Target:  5'- uGCgGCGCGUCcCCGU-GUCgCAGCGa- -3'
miRNA:   3'- -CGgCGCGUAGuGGCAgUAG-GUCGCgc -5'
30177 3' -57.9 NC_006273.1 + 36730 0.69 0.797641
Target:  5'- -aCGCGCAUcCugCGUCGgagcucagaccgggcUCCGGCGgGu -3'
miRNA:   3'- cgGCGCGUA-GugGCAGU---------------AGGUCGCgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.