miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 3' -57.9 NC_006273.1 + 37788 0.67 0.878272
Target:  5'- aGCCGU-CAUCGCCGaugUCGUCaucgcccugacaGGCGCGu -3'
miRNA:   3'- -CGGCGcGUAGUGGC---AGUAGg-----------UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 38086 0.7 0.743947
Target:  5'- cGCCGCGCGgccucggcggcgggCGCCGacUCGcgccccagcgCCAGCGCGc -3'
miRNA:   3'- -CGGCGCGUa-------------GUGGC--AGUa---------GGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 38197 0.7 0.711985
Target:  5'- cCCGCGCcgCgGCCGcUCAUCCGGagacgGCGg -3'
miRNA:   3'- cGGCGCGuaG-UGGC-AGUAGGUCg----CGC- -5'
30177 3' -57.9 NC_006273.1 + 38284 0.7 0.759561
Target:  5'- cCCGC-CAUCGCCGUCGgacccaccaucaccgUCGGCGCc -3'
miRNA:   3'- cGGCGcGUAGUGGCAGUa--------------GGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 38331 0.67 0.875533
Target:  5'- uGCCGCuGCcgcCGCCGUCGcgUCCGccccgaccaccgcguGCGCGu -3'
miRNA:   3'- -CGGCG-CGua-GUGGCAGU--AGGU---------------CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 38564 0.74 0.50965
Target:  5'- aCCGCGCGggcagCACCG-CGcCCAGCGCc -3'
miRNA:   3'- cGGCGCGUa----GUGGCaGUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 38623 0.69 0.78549
Target:  5'- uGCCGaCGCAcgGCCGUCAg-CAGCGaCGc -3'
miRNA:   3'- -CGGC-GCGUagUGGCAGUagGUCGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 38770 0.73 0.591591
Target:  5'- cGCCgGCGCAgcucccguccgagCGCCGUCGccUCCucGGCGCGc -3'
miRNA:   3'- -CGG-CGCGUa------------GUGGCAGU--AGG--UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 38908 0.7 0.749489
Target:  5'- cCCGCGCcgUGCCGaaccacUCGUCCGcgucGCGCGc -3'
miRNA:   3'- cGGCGCGuaGUGGC------AGUAGGU----CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 39152 0.72 0.614966
Target:  5'- cGUCGCGCccaCGCCGuUCAUCUggcuGCGCGg -3'
miRNA:   3'- -CGGCGCGua-GUGGC-AGUAGGu---CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 39457 0.67 0.884318
Target:  5'- cGCCGUggcccgGCGUCGCCGUaggcgcagcacucgCA-CCAGUGCc -3'
miRNA:   3'- -CGGCG------CGUAGUGGCA--------------GUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 40107 0.69 0.766809
Target:  5'- -aCGCGCGUCugUGUCuguuugaGUCCccaggggacggcAGCGCGg -3'
miRNA:   3'- cgGCGCGUAGugGCAG-------UAGG------------UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 40338 0.67 0.899014
Target:  5'- gGCgGCG-AUCcCCGUCGagCGGCGUGa -3'
miRNA:   3'- -CGgCGCgUAGuGGCAGUagGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 40470 0.67 0.87963
Target:  5'- cGCCGCGCccCcgacacaccccgACCG-CcgCCGGUGCGg -3'
miRNA:   3'- -CGGCGCGuaG------------UGGCaGuaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 40673 0.69 0.78549
Target:  5'- --aGCGCGUCGgCGUCc-UCAGCGCGu -3'
miRNA:   3'- cggCGCGUAGUgGCAGuaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 41399 0.71 0.67349
Target:  5'- cCCGgGCAacggCGCCGUCGgagcCCAGgGCGa -3'
miRNA:   3'- cGGCgCGUa---GUGGCAGUa---GGUCgCGC- -5'
30177 3' -57.9 NC_006273.1 + 42511 0.66 0.910887
Target:  5'- gGCCGa--GUCGCCGUUuUCCAcgGCGUGc -3'
miRNA:   3'- -CGGCgcgUAGUGGCAGuAGGU--CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 44909 0.71 0.702435
Target:  5'- cCUGCGCGcCACaaCGcCGUCCGGCGCa -3'
miRNA:   3'- cGGCGCGUaGUG--GCaGUAGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 47339 0.67 0.865698
Target:  5'- cCCGCGCcgccggCGCUGUCAUcgcccgaaaCCGGCGaCGa -3'
miRNA:   3'- cGGCGCGua----GUGGCAGUA---------GGUCGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 47903 0.67 0.872762
Target:  5'- cGCCGCGUcuUCGUCGUCGUCCucaGCa -3'
miRNA:   3'- -CGGCGCGu-AGUGGCAGUAGGucgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.