miRNA display CGI


Results 1 - 20 of 210 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 3' -57.9 NC_006273.1 + 235363 0.67 0.87963
Target:  5'- cGCCGCGCccCcgacacaccccgACCG-CcgCCGGUGCGg -3'
miRNA:   3'- -CGGCGCGuaG------------UGGCaGuaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 235000 0.69 0.766809
Target:  5'- -aCGCGCGUCugUGUCuguuugaGUCCccaggggacggcAGCGCGg -3'
miRNA:   3'- cgGCGCGUAGugGCAG-------UAGG------------UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 234350 0.67 0.884318
Target:  5'- cGCCGUggcccgGCGUCGCCGUaggcgcagcacucgCA-CCAGUGCc -3'
miRNA:   3'- -CGGCG------CGUAGUGGCA--------------GUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 234045 0.72 0.614966
Target:  5'- cGUCGCGCccaCGCCGuUCAUCUggcuGCGCGg -3'
miRNA:   3'- -CGGCGCGua-GUGGC-AGUAGGu---CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 233800 0.69 0.766809
Target:  5'- cCCGCGCcgUGCCGaaaccacUCGUCCGcgucGCGCGc -3'
miRNA:   3'- cGGCGCGuaGUGGC-------AGUAGGU----CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 233662 0.73 0.591591
Target:  5'- cGCCgGCGCAgcucccguccgagCGCCGUCGccUCCucGGCGCGc -3'
miRNA:   3'- -CGG-CGCGUa------------GUGGCAGU--AGG--UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 233457 0.74 0.50965
Target:  5'- aCCGCGCGggcagCACCG-CGcCCAGCGCc -3'
miRNA:   3'- cGGCGCGUa----GUGGCaGUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 233224 0.67 0.875533
Target:  5'- uGCCGCuGCcgcCGCCGUCGcgUCCGccccgaccaccgcguGCGCGu -3'
miRNA:   3'- -CGGCG-CGua-GUGGCAGU--AGGU---------------CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 233177 0.7 0.759561
Target:  5'- cCCGC-CAUCGCCGUCGgacccaccaucaccgUCGGCGCc -3'
miRNA:   3'- cGGCGcGUAGUGGCAGUa--------------GGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 233164 0.69 0.8112
Target:  5'- -aCGCGCcacguUCACCGcgUCGUgcCCAGCGCc -3'
miRNA:   3'- cgGCGCGu----AGUGGC--AGUA--GGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 232979 0.7 0.743947
Target:  5'- cGCCGCGCGgccucggcggcgggCGCCGacUCGcgccccagcgCCAGCGCGc -3'
miRNA:   3'- -CGGCGCGUa-------------GUGGC--AGUa---------GGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 227273 0.69 0.78549
Target:  5'- aGCCGUGCGUCACCcgcugCuuuUCUGGCGaCGc -3'
miRNA:   3'- -CGGCGCGUAGUGGca---Gu--AGGUCGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 227089 0.66 0.904462
Target:  5'- cGCCGCGUcuuggccugcaugAUCAUCGUCAUCaugauCGCc -3'
miRNA:   3'- -CGGCGCG-------------UAGUGGCAGUAGguc--GCGc -5'
30177 3' -57.9 NC_006273.1 + 221194 0.69 0.771303
Target:  5'- cGCCGCGgAaagugcuccgauuuuUCACCGUCGUUC-GCGaCGu -3'
miRNA:   3'- -CGGCGCgU---------------AGUGGCAGUAGGuCGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 220260 0.67 0.88564
Target:  5'- gGCCGCGgaCGUC-CCGUCAcgCCuagcacauaccacGGCGUGg -3'
miRNA:   3'- -CGGCGC--GUAGuGGCAGUa-GG-------------UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 217458 0.67 0.87963
Target:  5'- uGCCGaCGCAUgACUgGUUAUaCCAGUGUa -3'
miRNA:   3'- -CGGC-GCGUAgUGG-CAGUA-GGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 216525 0.66 0.927078
Target:  5'- uGCCaGCGCAgCA-CGUCucuuUUCAGCGUGu -3'
miRNA:   3'- -CGG-CGCGUaGUgGCAGu---AGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 215018 0.66 0.905057
Target:  5'- aCCGcCGgGUCGCgGUCcgCCGGUGUu -3'
miRNA:   3'- cGGC-GCgUAGUGgCAGuaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 215015 0.68 0.858442
Target:  5'- aCCGuCGCAgcgACCGUCGUCUgagcagugugGGCGCu -3'
miRNA:   3'- cGGC-GCGUag-UGGCAGUAGG----------UCGCGc -5'
30177 3' -57.9 NC_006273.1 + 213841 0.76 0.420982
Target:  5'- cGCCGCGC--CGCCGUCcucgaaacgCCAGCGCc -3'
miRNA:   3'- -CGGCGCGuaGUGGCAGua-------GGUCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.