miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 3' -57.9 NC_006273.1 + 41399 0.71 0.67349
Target:  5'- cCCGgGCAacggCGCCGUCGgagcCCAGgGCGa -3'
miRNA:   3'- cGGCgCGUa---GUGGCAGUa---GGUCgCGC- -5'
30177 3' -57.9 NC_006273.1 + 164454 0.72 0.614966
Target:  5'- cGCCGCGUcgCGCCcaggCGUCCAG-GCa -3'
miRNA:   3'- -CGGCGCGuaGUGGca--GUAGGUCgCGc -5'
30177 3' -57.9 NC_006273.1 + 234045 0.72 0.614966
Target:  5'- cGUCGCGCccaCGCCGuUCAUCUggcuGCGCGg -3'
miRNA:   3'- -CGGCGCGua-GUGGC-AGUAGGu---CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 144476 0.72 0.62473
Target:  5'- cGCCgGCGUcUCGCCGggCAUCCAGUuCGg -3'
miRNA:   3'- -CGG-CGCGuAGUGGCa-GUAGGUCGcGC- -5'
30177 3' -57.9 NC_006273.1 + 196140 0.72 0.644268
Target:  5'- gGCCGCGCcaugCGCaaGUgGUCgCAGCGCGa -3'
miRNA:   3'- -CGGCGCGua--GUGg-CAgUAG-GUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 88693 0.72 0.654027
Target:  5'- uGCgCGUGguUCugCGUCGUUaAGCGCGu -3'
miRNA:   3'- -CG-GCGCguAGugGCAGUAGgUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 72394 0.72 0.654027
Target:  5'- cGCCGCaGCugcCGCCGUCGagccUCCuccGCGCGu -3'
miRNA:   3'- -CGGCG-CGua-GUGGCAGU----AGGu--CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 137194 0.72 0.654027
Target:  5'- uGCCGCuCAgcgaGCuCGUCG-CCAGCGCGa -3'
miRNA:   3'- -CGGCGcGUag--UG-GCAGUaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 64955 0.71 0.667661
Target:  5'- aCCGCGUcccaccuacguacucGUCACCGUCAaCUcguuGGCGCGc -3'
miRNA:   3'- cGGCGCG---------------UAGUGGCAGUaGG----UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 187345 0.72 0.614966
Target:  5'- aGCgGCGcCGUCACCGcCAugUCCGGCGg- -3'
miRNA:   3'- -CGgCGC-GUAGUGGCaGU--AGGUCGCgc -5'
30177 3' -57.9 NC_006273.1 + 136953 0.72 0.614966
Target:  5'- gGgCGCGCAUCGCCGUCGagUAcGUGCu -3'
miRNA:   3'- -CgGCGCGUAGUGGCAGUagGU-CGCGc -5'
30177 3' -57.9 NC_006273.1 + 188913 0.72 0.605213
Target:  5'- gGCCuGgGCGUCACCGgcggUGUCCAGC-CGa -3'
miRNA:   3'- -CGG-CgCGUAGUGGCa---GUAGGUCGcGC- -5'
30177 3' -57.9 NC_006273.1 + 70927 0.76 0.396238
Target:  5'- cGCCGCGCcgaCAUCGUCAUCgAGCGg- -3'
miRNA:   3'- -CGGCGCGua-GUGGCAGUAGgUCGCgc -5'
30177 3' -57.9 NC_006273.1 + 191405 0.76 0.396238
Target:  5'- cGUCGC-CGUaGCCGUCGUCgAGCGCGa -3'
miRNA:   3'- -CGGCGcGUAgUGGCAGUAGgUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 53763 0.76 0.429435
Target:  5'- cGCCGCGCAcgugCACCGUCugggccgggcaAUCCugguguuGCGCGc -3'
miRNA:   3'- -CGGCGCGUa---GUGGCAG-----------UAGGu------CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 189890 0.76 0.429435
Target:  5'- cGCCGgGCAUCGCCGUCggCU-GCGaCGg -3'
miRNA:   3'- -CGGCgCGUAGUGGCAGuaGGuCGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 233457 0.74 0.50965
Target:  5'- aCCGCGCGggcagCACCG-CGcCCAGCGCc -3'
miRNA:   3'- cGGCGCGUa----GUGGCaGUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 124402 0.73 0.547292
Target:  5'- aGCCGCGCgAUC-UCGUCGUCgGGCGaCa -3'
miRNA:   3'- -CGGCGCG-UAGuGGCAGUAGgUCGC-Gc -5'
30177 3' -57.9 NC_006273.1 + 151238 0.73 0.576089
Target:  5'- gGCCGCGCcgCuccucgucuGCCGUgAUCaagCGGCGCGg -3'
miRNA:   3'- -CGGCGCGuaG---------UGGCAgUAG---GUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 233662 0.73 0.591591
Target:  5'- cGCCgGCGCAgcucccguccgagCGCCGUCGccUCCucGGCGCGc -3'
miRNA:   3'- -CGG-CGCGUa------------GUGGCAGU--AGG--UCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.