miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 3' -57.9 NC_006273.1 + 186111 0.81 0.234139
Target:  5'- uGCCGCGCAUCACCuguuaccaccaGUUGUUgGGCGCGc -3'
miRNA:   3'- -CGGCGCGUAGUGG-----------CAGUAGgUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 173216 0.72 0.643291
Target:  5'- gGCCGCGCcUCcguggcaGCCGUU-UCCAGCuGCGu -3'
miRNA:   3'- -CGGCGCGuAG-------UGGCAGuAGGUCG-CGC- -5'
30177 3' -57.9 NC_006273.1 + 1247 0.72 0.644268
Target:  5'- gGCCGCGCcaugCGCaaGUgGUCgCAGCGCGa -3'
miRNA:   3'- -CGGCGCGua--GUGg-CAgUAG-GUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 158213 0.66 0.929089
Target:  5'- gGUCGUGCAgcgugaggcgcgggCGCgCGUCggCCGGCGaCGg -3'
miRNA:   3'- -CGGCGCGUa-------------GUG-GCAGuaGGUCGC-GC- -5'
30177 3' -57.9 NC_006273.1 + 38564 0.74 0.50965
Target:  5'- aCCGCGCGggcagCACCG-CGcCCAGCGCc -3'
miRNA:   3'- cGGCGCGUa----GUGGCaGUaGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 197171 0.74 0.537791
Target:  5'- cGCCGCGguUucCGCCGUC-UCCGGaugaGCGg -3'
miRNA:   3'- -CGGCGCguA--GUGGCAGuAGGUCg---CGC- -5'
30177 3' -57.9 NC_006273.1 + 91273 0.73 0.556845
Target:  5'- uGUCGCGCAgacCcUCGUCGcgagCCAGCGCGg -3'
miRNA:   3'- -CGGCGCGUa--GuGGCAGUa---GGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 99817 0.73 0.556845
Target:  5'- cGCCGCugaGCAcggCGCugaugauguugaCGUCGUCCAGUGCGg -3'
miRNA:   3'- -CGGCG---CGUa--GUG------------GCAGUAGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 161004 0.73 0.576089
Target:  5'- aGCUGCGCGUCACCGaCG-CCGGCc-- -3'
miRNA:   3'- -CGGCGCGUAGUGGCaGUaGGUCGcgc -5'
30177 3' -57.9 NC_006273.1 + 93636 0.72 0.6345
Target:  5'- uUCGCGCAUcCACUGgcg-CCGGCGCGc -3'
miRNA:   3'- cGGCGCGUA-GUGGCaguaGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 119996 0.72 0.605213
Target:  5'- cGCCGcCGCucauaaugccGUCACCGUCGcgUCCGaCGCGa -3'
miRNA:   3'- -CGGC-GCG----------UAGUGGCAGU--AGGUcGCGC- -5'
30177 3' -57.9 NC_006273.1 + 132388 0.73 0.566446
Target:  5'- gGCUGCGCGaCGgCGUCuccgGUCUGGCGCGa -3'
miRNA:   3'- -CGGCGCGUaGUgGCAG----UAGGUCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 111910 0.76 0.404382
Target:  5'- aGCCGCGCAUCACacggCGUUacacgacuGUCUGGCGCu -3'
miRNA:   3'- -CGGCGCGUAGUG----GCAG--------UAGGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 39152 0.72 0.614966
Target:  5'- cGUCGCGCccaCGCCGuUCAUCUggcuGCGCGg -3'
miRNA:   3'- -CGGCGCGua-GUGGC-AGUAGGu---CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 213841 0.76 0.420982
Target:  5'- cGCCGCGC--CGCCGUCcucgaaacgCCAGCGCc -3'
miRNA:   3'- -CGGCGCGuaGUGGCAGua-------GGUCGCGc -5'
30177 3' -57.9 NC_006273.1 + 123164 0.73 0.556845
Target:  5'- cGCCGCGCAUUGCCaccgccgcGUCcUCCAGCa-- -3'
miRNA:   3'- -CGGCGCGUAGUGG--------CAGuAGGUCGcgc -5'
30177 3' -57.9 NC_006273.1 + 101373 0.72 0.62473
Target:  5'- gGCCguGCGCAUCGCCugccUCAUCCgacagAGCGUGc -3'
miRNA:   3'- -CGG--CGCGUAGUGGc---AGUAGG-----UCGCGC- -5'
30177 3' -57.9 NC_006273.1 + 102950 0.72 0.644268
Target:  5'- uGCuCGCGCAccgUACCGUCGUCCAuuaacaacGcCGCGu -3'
miRNA:   3'- -CG-GCGCGUa--GUGGCAGUAGGU--------C-GCGC- -5'
30177 3' -57.9 NC_006273.1 + 94118 0.75 0.473136
Target:  5'- gGCCacaCGCAUCACCGUCAaagCCugcuGCGUGg -3'
miRNA:   3'- -CGGc--GCGUAGUGGCAGUa--GGu---CGCGC- -5'
30177 3' -57.9 NC_006273.1 + 170663 0.73 0.548245
Target:  5'- aGCCGCGCGUCcagacgcgcGCCcucuuccaugauggCGUCCAGCGCc -3'
miRNA:   3'- -CGGCGCGUAG---------UGGca------------GUAGGUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.