miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 5' -56.6 NC_006273.1 + 179206 0.66 0.948578
Target:  5'- aCUGGccGgaCGACAGCGUCAcagAGGGCg -3'
miRNA:   3'- aGGCU--CgaGUUGUCGCAGUcg-UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 64259 0.66 0.948578
Target:  5'- -aCGGGCguugCGGCGGCGgccgaAGCGGauGGCg -3'
miRNA:   3'- agGCUCGa---GUUGUCGCag---UCGUC--CCG- -5'
30177 5' -56.6 NC_006273.1 + 142174 0.66 0.948578
Target:  5'- aUCCGGGagUAGCGucuaCGUCAGCAGGuGUa -3'
miRNA:   3'- -AGGCUCgaGUUGUc---GCAGUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 184561 0.66 0.948578
Target:  5'- uUCC-AGCaaUCcuCGGCGUCGGCGcGGCc -3'
miRNA:   3'- -AGGcUCG--AGuuGUCGCAGUCGUcCCG- -5'
30177 5' -56.6 NC_006273.1 + 187315 0.66 0.948578
Target:  5'- gUCaCGGGUuUCAACAGaucgaCGUCGGuCAGcGGCg -3'
miRNA:   3'- -AG-GCUCG-AGUUGUC-----GCAGUC-GUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 147874 0.66 0.948578
Target:  5'- gCCGcGCUggcaaacucCGACAuucGCGUCGGCGcccGGGCc -3'
miRNA:   3'- aGGCuCGA---------GUUGU---CGCAGUCGU---CCCG- -5'
30177 5' -56.6 NC_006273.1 + 33333 0.66 0.948578
Target:  5'- gCCGAGCUgAACuGCGgCAGCcGcGuGCg -3'
miRNA:   3'- aGGCUCGAgUUGuCGCaGUCGuC-C-CG- -5'
30177 5' -56.6 NC_006273.1 + 232879 0.66 0.948165
Target:  5'- cCCGugcGGCUCGcgcgcccACAGCG-CGGCGcgcGGGUg -3'
miRNA:   3'- aGGC---UCGAGU-------UGUCGCaGUCGU---CCCG- -5'
30177 5' -56.6 NC_006273.1 + 37986 0.66 0.948165
Target:  5'- cCCGugcGGCUCGcgcgcccACAGCG-CGGCGcgcGGGUg -3'
miRNA:   3'- aGGC---UCGAGU-------UGUCGCaGUCGU---CCCG- -5'
30177 5' -56.6 NC_006273.1 + 37329 0.66 0.944341
Target:  5'- gCCGuuGCUuuggCGGCAGCGg-AGguGGGCc -3'
miRNA:   3'- aGGCu-CGA----GUUGUCGCagUCguCCCG- -5'
30177 5' -56.6 NC_006273.1 + 167653 0.66 0.944341
Target:  5'- -gUGAGCg--GCGGCGcaaCGGCGGGGUc -3'
miRNA:   3'- agGCUCGaguUGUCGCa--GUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 163699 0.66 0.944341
Target:  5'- cCCGAGga-GGCGGCGgCGGUGGuGGCg -3'
miRNA:   3'- aGGCUCgagUUGUCGCaGUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 128678 0.66 0.944341
Target:  5'- cCCGAGCUCgu-GGUGUacguGGUGGGGUu -3'
miRNA:   3'- aGGCUCGAGuugUCGCAg---UCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 128401 0.66 0.944341
Target:  5'- gUCCauGCUCAGCGGCGUUaAGCuGuGCg -3'
miRNA:   3'- -AGGcuCGAGUUGUCGCAG-UCGuCcCG- -5'
30177 5' -56.6 NC_006273.1 + 55731 0.66 0.944341
Target:  5'- aCCGA-CUCGguGCGGCGUuaCAGCAcGGUg -3'
miRNA:   3'- aGGCUcGAGU--UGUCGCA--GUCGUcCCG- -5'
30177 5' -56.6 NC_006273.1 + 193560 0.66 0.944341
Target:  5'- cCCGcAGCaaCAACAGCGUCAcGC--GGCu -3'
miRNA:   3'- aGGC-UCGa-GUUGUCGCAGU-CGucCCG- -5'
30177 5' -56.6 NC_006273.1 + 81580 0.66 0.944341
Target:  5'- cUCCGAGaggucCUCGcagGCGGCGgccgcggccgCGGCGGaGGCc -3'
miRNA:   3'- -AGGCUC-----GAGU---UGUCGCa---------GUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 141720 0.66 0.939881
Target:  5'- aUCCGccGC-CAuu-GCGUCgucccAGCAGGGCg -3'
miRNA:   3'- -AGGCu-CGaGUuguCGCAG-----UCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 231132 0.66 0.939881
Target:  5'- aCCGuGC---ACGGCGUCGGCAGaGUu -3'
miRNA:   3'- aGGCuCGaguUGUCGCAGUCGUCcCG- -5'
30177 5' -56.6 NC_006273.1 + 142790 0.66 0.939881
Target:  5'- -gCGAGCaaCAGCAGCcgccGUCGcuGguGGGCa -3'
miRNA:   3'- agGCUCGa-GUUGUCG----CAGU--CguCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.