miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 5' -56.6 NC_006273.1 + 115515 0.66 0.935197
Target:  5'- cUCUGGGCUgaGACAGgacgaGGCAGGGUg -3'
miRNA:   3'- -AGGCUCGAg-UUGUCgcag-UCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 220779 0.66 0.925153
Target:  5'- ---cAGCguauccCAACGGCGUCAGCGGcucgcGGCa -3'
miRNA:   3'- aggcUCGa-----GUUGUCGCAGUCGUC-----CCG- -5'
30177 5' -56.6 NC_006273.1 + 151992 0.66 0.925153
Target:  5'- gCCGGGCcgggUGGCGGCGgCAGCAGcccgacguGGCc -3'
miRNA:   3'- aGGCUCGa---GUUGUCGCaGUCGUC--------CCG- -5'
30177 5' -56.6 NC_006273.1 + 27025 0.66 0.932278
Target:  5'- -aCGAGCUC-GCGGCGcguagaaagccaagCGGCgcaAGGGCc -3'
miRNA:   3'- agGCUCGAGuUGUCGCa-------------GUCG---UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 135579 0.66 0.925153
Target:  5'- gCCGuGCUCAGCGGCGUguaCAGCu---- -3'
miRNA:   3'- aGGCuCGAGUUGUCGCA---GUCGucccg -5'
30177 5' -56.6 NC_006273.1 + 188874 0.66 0.925153
Target:  5'- uUCCGcgguGGCUUuugUGGCGUCGGCguuuucgggaAGGGCc -3'
miRNA:   3'- -AGGC----UCGAGuu-GUCGCAGUCG----------UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 35188 0.66 0.925153
Target:  5'- cUCGAGUcCAACGGCGagaAGCAaaaacgccguGGGCa -3'
miRNA:   3'- aGGCUCGaGUUGUCGCag-UCGU----------CCCG- -5'
30177 5' -56.6 NC_006273.1 + 30759 0.66 0.939881
Target:  5'- cCCGAGa---ACGGCGcCGGCGGcGGUg -3'
miRNA:   3'- aGGCUCgaguUGUCGCaGUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 62032 0.66 0.935197
Target:  5'- gCCGAaCagAGCGGCGgcaccgCGGCGGcGGCg -3'
miRNA:   3'- aGGCUcGagUUGUCGCa-----GUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 101967 0.66 0.930288
Target:  5'- gCCGucgcgucGCUUGACGGCcacgCAGCAGGcGCc -3'
miRNA:   3'- aGGCu------CGAGUUGUCGca--GUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 163830 0.66 0.925153
Target:  5'- cUCCGGuugucgcaagucGC-CGGCAGCGgccgcCGGCgAGGGCc -3'
miRNA:   3'- -AGGCU------------CGaGUUGUCGCa----GUCG-UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 104248 0.66 0.930288
Target:  5'- gCCGuGUUCG--GGCGagAGCAcGGGCg -3'
miRNA:   3'- aGGCuCGAGUugUCGCagUCGU-CCCG- -5'
30177 5' -56.6 NC_006273.1 + 142174 0.66 0.948578
Target:  5'- aUCCGGGagUAGCGucuaCGUCAGCAGGuGUa -3'
miRNA:   3'- -AGGCUCgaGUUGUc---GCAGUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 22278 0.66 0.939881
Target:  5'- gCCGucggugcGCUCAucugcgGCAGCGguacccgacgCGGCAGcGGCg -3'
miRNA:   3'- aGGCu------CGAGU------UGUCGCa---------GUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 67802 0.66 0.939881
Target:  5'- -aCGGGCggaUCAACgAGUGUCuGCAcGGCg -3'
miRNA:   3'- agGCUCG---AGUUG-UCGCAGuCGUcCCG- -5'
30177 5' -56.6 NC_006273.1 + 196838 0.66 0.935197
Target:  5'- cCCGcgcgguGGCUgGGuuGCG-CGGCGGGGCc -3'
miRNA:   3'- aGGC------UCGAgUUguCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 141720 0.66 0.939881
Target:  5'- aUCCGccGC-CAuu-GCGUCgucccAGCAGGGCg -3'
miRNA:   3'- -AGGCu-CGaGUuguCGCAG-----UCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 142790 0.66 0.939881
Target:  5'- -gCGAGCaaCAGCAGCcgccGUCGcuGguGGGCa -3'
miRNA:   3'- agGCUCGa-GUUGUCG----CAGU--CguCCCG- -5'
30177 5' -56.6 NC_006273.1 + 231132 0.66 0.939881
Target:  5'- aCCGuGC---ACGGCGUCGGCAGaGUu -3'
miRNA:   3'- aGGCuCGaguUGUCGCAGUCGUCcCG- -5'
30177 5' -56.6 NC_006273.1 + 52555 0.66 0.938499
Target:  5'- gCCGAGCUCGucgccgccguugccACAggaaccgguGCcUCcGCAGGGCc -3'
miRNA:   3'- aGGCUCGAGU--------------UGU---------CGcAGuCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.