miRNA display CGI


Results 21 - 40 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 5' -56.6 NC_006273.1 + 104248 0.66 0.930288
Target:  5'- gCCGuGUUCG--GGCGagAGCAcGGGCg -3'
miRNA:   3'- aGGCuCGAGUugUCGCagUCGU-CCCG- -5'
30177 5' -56.6 NC_006273.1 + 94961 0.66 0.930288
Target:  5'- uUCCGGGuCUC-GCGGCGgcucccucUCGGCGgcuccgguuGGGCu -3'
miRNA:   3'- -AGGCUC-GAGuUGUCGC--------AGUCGU---------CCCG- -5'
30177 5' -56.6 NC_006273.1 + 1946 0.66 0.935197
Target:  5'- cCCGcgcgguGGCUgGGuuGCG-CGGCGGGGCc -3'
miRNA:   3'- aGGC------UCGAgUUguCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 85638 0.66 0.939881
Target:  5'- cUCaCGcGCUCccguAACAGCGcCGGCAGccGGCc -3'
miRNA:   3'- -AG-GCuCGAG----UUGUCGCaGUCGUC--CCG- -5'
30177 5' -56.6 NC_006273.1 + 154337 0.66 0.925153
Target:  5'- cUCCGugaaucGUUaCGACuGGCGgCAGCAGGGUc -3'
miRNA:   3'- -AGGCu-----CGA-GUUG-UCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 81580 0.66 0.944341
Target:  5'- cUCCGAGaggucCUCGcagGCGGCGgccgcggccgCGGCGGaGGCc -3'
miRNA:   3'- -AGGCUC-----GAGU---UGUCGCa---------GUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 193560 0.66 0.944341
Target:  5'- cCCGcAGCaaCAACAGCGUCAcGC--GGCu -3'
miRNA:   3'- aGGC-UCGa-GUUGUCGCAGU-CGucCCG- -5'
30177 5' -56.6 NC_006273.1 + 113898 0.66 0.930288
Target:  5'- cUCCGgcaAGCUCuuuauGCA-CGUCAcGCuGGGCu -3'
miRNA:   3'- -AGGC---UCGAGu----UGUcGCAGU-CGuCCCG- -5'
30177 5' -56.6 NC_006273.1 + 189948 0.66 0.934716
Target:  5'- gUCUGcAGCUCGucggcCGGCGUgGGCGgcucgcggagacuGGGCu -3'
miRNA:   3'- -AGGC-UCGAGUu----GUCGCAgUCGU-------------CCCG- -5'
30177 5' -56.6 NC_006273.1 + 121468 0.66 0.939881
Target:  5'- -aCGAGCcCAgaguggacacACGGUGacgCGGCAGGGUc -3'
miRNA:   3'- agGCUCGaGU----------UGUCGCa--GUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 187315 0.66 0.948578
Target:  5'- gUCaCGGGUuUCAACAGaucgaCGUCGGuCAGcGGCg -3'
miRNA:   3'- -AG-GCUCG-AGUUGUC-----GCAGUC-GUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 37329 0.66 0.944341
Target:  5'- gCCGuuGCUuuggCGGCAGCGg-AGguGGGCc -3'
miRNA:   3'- aGGCu-CGA----GUUGUCGCagUCguCCCG- -5'
30177 5' -56.6 NC_006273.1 + 101967 0.66 0.930288
Target:  5'- gCCGucgcgucGCUUGACGGCcacgCAGCAGGcGCc -3'
miRNA:   3'- aGGCu------CGAGUUGUCGca--GUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 220779 0.66 0.925153
Target:  5'- ---cAGCguauccCAACGGCGUCAGCGGcucgcGGCa -3'
miRNA:   3'- aggcUCGa-----GUUGUCGCAGUCGUC-----CCG- -5'
30177 5' -56.6 NC_006273.1 + 163830 0.66 0.925153
Target:  5'- cUCCGGuugucgcaagucGC-CGGCAGCGgccgcCGGCgAGGGCc -3'
miRNA:   3'- -AGGCU------------CGaGUUGUCGCa----GUCG-UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 35188 0.66 0.925153
Target:  5'- cUCGAGUcCAACGGCGagaAGCAaaaacgccguGGGCa -3'
miRNA:   3'- aGGCUCGaGUUGUCGCag-UCGU----------CCCG- -5'
30177 5' -56.6 NC_006273.1 + 188874 0.66 0.925153
Target:  5'- uUCCGcgguGGCUUuugUGGCGUCGGCguuuucgggaAGGGCc -3'
miRNA:   3'- -AGGC----UCGAGuu-GUCGCAGUCG----------UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 151992 0.66 0.925153
Target:  5'- gCCGGGCcgggUGGCGGCGgCAGCAGcccgacguGGCc -3'
miRNA:   3'- aGGCUCGa---GUUGUCGCaGUCGUC--------CCG- -5'
30177 5' -56.6 NC_006273.1 + 135579 0.66 0.925153
Target:  5'- gCCGuGCUCAGCGGCGUguaCAGCu---- -3'
miRNA:   3'- aGGCuCGAGUUGUCGCA---GUCGucccg -5'
30177 5' -56.6 NC_006273.1 + 142174 0.66 0.948578
Target:  5'- aUCCGGGagUAGCGucuaCGUCAGCAGGuGUa -3'
miRNA:   3'- -AGGCUCgaGUUGUc---GCAGUCGUCC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.