Results 1 - 20 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30177 | 5' | -56.6 | NC_006273.1 | + | 165307 | 1.11 | 0.002837 |
Target: 5'- gUCCGAGCUCAACAGCGUCAGCAGGGCc -3' miRNA: 3'- -AGGCUCGAGUUGUCGCAGUCGUCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 121762 | 0.77 | 0.384065 |
Target: 5'- cCCGAcGCgugaaUAACAGCGUCGGCuacGGGCa -3' miRNA: 3'- aGGCU-CGa----GUUGUCGCAGUCGu--CCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 94877 | 0.77 | 0.417243 |
Target: 5'- cCCG-GCUCGACGGCaGUCGGUcccggaagguugGGGGCu -3' miRNA: 3'- aGGCuCGAGUUGUCG-CAGUCG------------UCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 163327 | 0.77 | 0.387303 |
Target: 5'- gCCGAGCUCGuacacugcucgcucuGCGGCaGUCAGC-GGGUa -3' miRNA: 3'- aGGCUCGAGU---------------UGUCG-CAGUCGuCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 194632 | 0.76 | 0.451221 |
Target: 5'- uUCCGcuucuucGGCUCGACAGcCGUCAGCcucGGCg -3' miRNA: 3'- -AGGC-------UCGAGUUGUC-GCAGUCGuc-CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 38825 | 0.76 | 0.443244 |
Target: 5'- gUCgGAGCgccggcugaggCAGCAGCGUCGcgcGCGGGGUg -3' miRNA: 3'- -AGgCUCGa----------GUUGUCGCAGU---CGUCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 2155 | 0.76 | 0.470133 |
Target: 5'- gUCgGGGCggacgCGACGGCGgCGGCAGcGGCa -3' miRNA: 3'- -AGgCUCGa----GUUGUCGCaGUCGUC-CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 233717 | 0.76 | 0.443244 |
Target: 5'- gUCgGAGCgccggcugaggCAGCAGCGUCGcgcGCGGGGUg -3' miRNA: 3'- -AGgCUCGa----------GUUGUCGCAGU---CGUCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 197048 | 0.76 | 0.470133 |
Target: 5'- gUCgGGGCggacgCGACGGCGgCGGCAGcGGCa -3' miRNA: 3'- -AGgCUCGa----GUUGUCGCaGUCGUC-CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 163071 | 0.76 | 0.470133 |
Target: 5'- gUCCGAGg-CGGCGGCGaCGGCGGcGGCu -3' miRNA: 3'- -AGGCUCgaGUUGUCGCaGUCGUC-CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 147549 | 0.75 | 0.497829 |
Target: 5'- -aCGAgGCU-GGCGGCGUCGGCGGGaGCa -3' miRNA: 3'- agGCU-CGAgUUGUCGCAGUCGUCC-CG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 76257 | 0.75 | 0.488513 |
Target: 5'- aUCCGGGCcgucaCAACGGCGguggcacCAGCGGGGg -3' miRNA: 3'- -AGGCUCGa----GUUGUCGCa------GUCGUCCCg -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 122839 | 0.74 | 0.545501 |
Target: 5'- gCUGAcGCggCGACcGCGUCAGaCGGGGCg -3' miRNA: 3'- aGGCU-CGa-GUUGuCGCAGUC-GUCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 216967 | 0.74 | 0.581702 |
Target: 5'- uUCgCGGGC-CGucuuggccacggccGCAGCGUCAGUGGGGUc -3' miRNA: 3'- -AG-GCUCGaGU--------------UGUCGCAGUCGUCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 185996 | 0.73 | 0.624335 |
Target: 5'- gCCGAaaaCGACgAGgGUCGGCAGGGCa -3' miRNA: 3'- aGGCUcgaGUUG-UCgCAGUCGUCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 173514 | 0.73 | 0.594547 |
Target: 5'- gUUCGugcaacuGCUCGGCGGCGUaCAGCGGGucGCg -3' miRNA: 3'- -AGGCu------CGAGUUGUCGCA-GUCGUCC--CG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 197333 | 0.73 | 0.624335 |
Target: 5'- cCCGAGCUgGACcGCGagCAGUGGGaGCg -3' miRNA: 3'- aGGCUCGAgUUGuCGCa-GUCGUCC-CG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 195083 | 0.73 | 0.614391 |
Target: 5'- gUCgCGGGCgugugcCGGguGUGUCGGCGGGGUg -3' miRNA: 3'- -AG-GCUCGa-----GUUguCGCAGUCGUCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 167206 | 0.73 | 0.594547 |
Target: 5'- gCCG-GCguaAACAGCGUCAGCGGccGGUg -3' miRNA: 3'- aGGCuCGag-UUGUCGCAGUCGUC--CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 119707 | 0.73 | 0.614391 |
Target: 5'- cUCCaGGGCgUCuacCAGCGUCAGCGGGaugGCg -3' miRNA: 3'- -AGG-CUCG-AGuu-GUCGCAGUCGUCC---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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