Results 21 - 40 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30177 | 5' | -56.6 | NC_006273.1 | + | 2440 | 0.73 | 0.624335 |
Target: 5'- cCCGAGCUgGACcGCGagCAGUGGGaGCg -3' miRNA: 3'- aGGCUCGAgUUGuCGCa-GUCGUCC-CG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 96246 | 0.73 | 0.624335 |
Target: 5'- aCCGAcuuuaaaaagugGCUCGACGGCGgcuUCAGUaccgccgucgAGGGCg -3' miRNA: 3'- aGGCU------------CGAGUUGUCGC---AGUCG----------UCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 185996 | 0.73 | 0.624335 |
Target: 5'- gCCGAaaaCGACgAGgGUCGGCAGGGCa -3' miRNA: 3'- aGGCUcgaGUUG-UCgCAGUCGUCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 197333 | 0.73 | 0.624335 |
Target: 5'- cCCGAGCUgGACcGCGagCAGUGGGaGCg -3' miRNA: 3'- aGGCUCGAgUUGuCGCa-GUCGUCC-CG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 167312 | 0.72 | 0.664094 |
Target: 5'- cUCCG-GCcaCAGCGGCGgCAGCGGcGGCc -3' miRNA: 3'- -AGGCuCGa-GUUGUCGCaGUCGUC-CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 214151 | 0.72 | 0.673992 |
Target: 5'- cUCCaGGCgaUCAGCAGCGgcagccaCAGCGGcGGCa -3' miRNA: 3'- -AGGcUCG--AGUUGUCGCa------GUCGUC-CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 98199 | 0.72 | 0.673992 |
Target: 5'- -aCGAGCUCGcugAGCGgCAGCGGcGGCa -3' miRNA: 3'- agGCUCGAGUug-UCGCaGUCGUC-CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 116965 | 0.72 | 0.693683 |
Target: 5'- -gCGGGCUCugggaagcuGCGGCGgcuugggCAGCAGcGGCg -3' miRNA: 3'- agGCUCGAGu--------UGUCGCa------GUCGUC-CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 33265 | 0.71 | 0.711241 |
Target: 5'- gUCCGAGUUCcagcggggccuuGCGGCGgCAGCGGuuGGCg -3' miRNA: 3'- -AGGCUCGAGu-----------UGUCGCaGUCGUC--CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 196602 | 0.71 | 0.71318 |
Target: 5'- gCCGAGaggCGACGGCGcUCGGaCGGGaGCu -3' miRNA: 3'- aGGCUCga-GUUGUCGC-AGUC-GUCC-CG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 144465 | 0.71 | 0.751322 |
Target: 5'- -aCGGGCUCGcgcgcCGGCGUCucGCcGGGCa -3' miRNA: 3'- agGCUCGAGUu----GUCGCAGu-CGuCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 39166 | 0.7 | 0.769833 |
Target: 5'- gCCGGGCUgCGgcggugcuccgaGCGGCGUU-GCGGGGUu -3' miRNA: 3'- aGGCUCGA-GU------------UGUCGCAGuCGUCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 162993 | 0.7 | 0.769833 |
Target: 5'- ---aGGCUCGACGGCGgCAGCuGcGGCg -3' miRNA: 3'- aggcUCGAGUUGUCGCaGUCGuC-CCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 211778 | 0.7 | 0.791428 |
Target: 5'- cCCGGGCUCGGCGGCGacgugaacgauccuUCAucGCguuugccgugcagcAGGGCc -3' miRNA: 3'- aGGCUCGAGUUGUCGC--------------AGU--CG--------------UCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 189313 | 0.7 | 0.796709 |
Target: 5'- aCCGcGGCaccuGCGGCGUCGGC-GGGUg -3' miRNA: 3'- aGGC-UCGagu-UGUCGCAGUCGuCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 188042 | 0.7 | 0.796709 |
Target: 5'- uUUCGGGCgauGACAGCGcCGGCGGcGCg -3' miRNA: 3'- -AGGCUCGag-UUGUCGCaGUCGUCcCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 111356 | 0.69 | 0.805397 |
Target: 5'- gCUGGGUUCAGCGGCGUgaucCAGguGGuGg -3' miRNA: 3'- aGGCUCGAGUUGUCGCA----GUCguCC-Cg -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 155332 | 0.69 | 0.805397 |
Target: 5'- aCC-AGCUCAuGCAGCGUCu-CAcGGGCg -3' miRNA: 3'- aGGcUCGAGU-UGUCGCAGucGU-CCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 194917 | 0.69 | 0.805397 |
Target: 5'- gUCgGGGUgugUCGGgGGCG-CGGCGGGGUg -3' miRNA: 3'- -AGgCUCG---AGUUgUCGCaGUCGUCCCG- -5' |
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30177 | 5' | -56.6 | NC_006273.1 | + | 232742 | 0.69 | 0.805397 |
Target: 5'- cCCaGAGCUUG--AGCGUCGGCGcGGCg -3' miRNA: 3'- aGG-CUCGAGUugUCGCAGUCGUcCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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