miRNA display CGI


Results 41 - 60 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 5' -56.6 NC_006273.1 + 163830 0.66 0.925153
Target:  5'- cUCCGGuugucgcaagucGC-CGGCAGCGgccgcCGGCgAGGGCc -3'
miRNA:   3'- -AGGCU------------CGaGUUGUCGCa----GUCG-UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 220779 0.66 0.925153
Target:  5'- ---cAGCguauccCAACGGCGUCAGCGGcucgcGGCa -3'
miRNA:   3'- aggcUCGa-----GUUGUCGCAGUCGUC-----CCG- -5'
30177 5' -56.6 NC_006273.1 + 154337 0.66 0.925153
Target:  5'- cUCCGugaaucGUUaCGACuGGCGgCAGCAGGGUc -3'
miRNA:   3'- -AGGCu-----CGA-GUUG-UCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 135579 0.66 0.925153
Target:  5'- gCCGuGCUCAGCGGCGUguaCAGCu---- -3'
miRNA:   3'- aGGCuCGAGUUGUCGCA---GUCGucccg -5'
30177 5' -56.6 NC_006273.1 + 35188 0.66 0.925153
Target:  5'- cUCGAGUcCAACGGCGagaAGCAaaaacgccguGGGCa -3'
miRNA:   3'- aGGCUCGaGUUGUCGCag-UCGU----------CCCG- -5'
30177 5' -56.6 NC_006273.1 + 140507 0.67 0.919792
Target:  5'- uUCCGGGaC-CGACuGcCGUCgAGCcGGGGCg -3'
miRNA:   3'- -AGGCUC-GaGUUGuC-GCAG-UCG-UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 51583 0.67 0.919792
Target:  5'- aCgGAGgggUGGCGGCGgCAGCGGGGUc -3'
miRNA:   3'- aGgCUCga-GUUGUCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 165798 0.67 0.914205
Target:  5'- cUCCGcggggugcguguGGCUCugauGCuGCGUgaGGUAGGGCc -3'
miRNA:   3'- -AGGC------------UCGAGu---UGuCGCAg-UCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 153587 0.67 0.914205
Target:  5'- aUCUGAGCg--GCGGCGUgacCGGCGGuGCg -3'
miRNA:   3'- -AGGCUCGaguUGUCGCA---GUCGUCcCG- -5'
30177 5' -56.6 NC_006273.1 + 7694 0.67 0.914205
Target:  5'- -aUGGGCggcggCGGCAGUGgccgcggCAGCGGGGa -3'
miRNA:   3'- agGCUCGa----GUUGUCGCa------GUCGUCCCg -5'
30177 5' -56.6 NC_006273.1 + 46808 0.67 0.914205
Target:  5'- cCCGAGgaCAuCAGCGUgCAcCuGGGCg -3'
miRNA:   3'- aGGCUCgaGUuGUCGCA-GUcGuCCCG- -5'
30177 5' -56.6 NC_006273.1 + 38074 0.67 0.914205
Target:  5'- aUCGAGCgucaCGGCAcGcCGUCuugaacGCAGGGCc -3'
miRNA:   3'- aGGCUCGa---GUUGU-C-GCAGu-----CGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 157842 0.67 0.914205
Target:  5'- gUCGuGgUUAGCGGCGUgCAGCAGGu- -3'
miRNA:   3'- aGGCuCgAGUUGUCGCA-GUCGUCCcg -5'
30177 5' -56.6 NC_006273.1 + 232960 0.67 0.910746
Target:  5'- gUCC-AGCUCGggcagcagccgccgcGCGGCcUCGGCGgcGGGCg -3'
miRNA:   3'- -AGGcUCGAGU---------------UGUCGcAGUCGU--CCCG- -5'
30177 5' -56.6 NC_006273.1 + 38067 0.67 0.910746
Target:  5'- gUCC-AGCUCGggcagcagccgccgcGCGGCcUCGGCGgcGGGCg -3'
miRNA:   3'- -AGGcUCGAGU---------------UGUCGcAGUCGU--CCCG- -5'
30177 5' -56.6 NC_006273.1 + 161954 0.67 0.908395
Target:  5'- -gCGAgGCUuCGGCuGGCGccaagacgCAGCAGGGCu -3'
miRNA:   3'- agGCU-CGA-GUUG-UCGCa-------GUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 39827 0.67 0.908395
Target:  5'- aCgGGGCUCAGC-GUGUgGcGCGGcGGCg -3'
miRNA:   3'- aGgCUCGAGUUGuCGCAgU-CGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 39214 0.67 0.908395
Target:  5'- gUCCGAGCggCAGCAGCGUgcccGCGucGCg -3'
miRNA:   3'- -AGGCUCGa-GUUGUCGCAgu--CGUccCG- -5'
30177 5' -56.6 NC_006273.1 + 26573 0.67 0.908395
Target:  5'- gCCGGGCUCAACcuguGCGccaCAGCGcccaucGGCg -3'
miRNA:   3'- aGGCUCGAGUUGu---CGCa--GUCGUc-----CCG- -5'
30177 5' -56.6 NC_006273.1 + 181195 0.67 0.908395
Target:  5'- cUCCGAacGCUCGugAGCaacaGUCGGCAGa-- -3'
miRNA:   3'- -AGGCU--CGAGUugUCG----CAGUCGUCccg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.