miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 5' -56.6 NC_006273.1 + 24 0.69 0.805397
Target:  5'- gUCgGGGUgugUCGGgGGCG-CGGCGGGGUg -3'
miRNA:   3'- -AGgCUCG---AGUUgUCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 190 0.73 0.614391
Target:  5'- gUCgCGGGCgugugcCGGguGUGUCGGCGGGGUg -3'
miRNA:   3'- -AG-GCUCGa-----GUUguCGCAGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 936 0.68 0.853392
Target:  5'- uUCgGGGCggCGACGGCGUUguuuucgGGCGugcuGGGCg -3'
miRNA:   3'- -AGgCUCGa-GUUGUCGCAG-------UCGU----CCCG- -5'
30177 5' -56.6 NC_006273.1 + 1709 0.68 0.854152
Target:  5'- gCCGAGgaggCGACGGCGcUCGGaCGGGaGCu -3'
miRNA:   3'- aGGCUCga--GUUGUCGC-AGUC-GUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 1902 0.69 0.846463
Target:  5'- uUCCGAGgaCGGCgucucugucuGGCGUCAGCAccuGGUu -3'
miRNA:   3'- -AGGCUCgaGUUG----------UCGCAGUCGUc--CCG- -5'
30177 5' -56.6 NC_006273.1 + 1946 0.66 0.935197
Target:  5'- cCCGcgcgguGGCUgGGuuGCG-CGGCGGGGCc -3'
miRNA:   3'- aGGC------UCGAgUUguCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 2155 0.76 0.470133
Target:  5'- gUCgGGGCggacgCGACGGCGgCGGCAGcGGCa -3'
miRNA:   3'- -AGgCUCGa----GUUGUCGCaGUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 2440 0.73 0.624335
Target:  5'- cCCGAGCUgGACcGCGagCAGUGGGaGCg -3'
miRNA:   3'- aGGCUCGAgUUGuCGCa-GUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 6251 0.69 0.830541
Target:  5'- aUCGAGCUCGccgGCGGCGaaacaacCAGCGccGGGUa -3'
miRNA:   3'- aGGCUCGAGU---UGUCGCa------GUCGU--CCCG- -5'
30177 5' -56.6 NC_006273.1 + 7694 0.67 0.914205
Target:  5'- -aUGGGCggcggCGGCAGUGgccgcggCAGCGGGGa -3'
miRNA:   3'- agGCUCGa----GUUGUCGCa------GUCGUCCCg -5'
30177 5' -56.6 NC_006273.1 + 13211 0.68 0.889636
Target:  5'- cCCGuGCggCGuuACAGCGUCuGguGcGGCa -3'
miRNA:   3'- aGGCuCGa-GU--UGUCGCAGuCguC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 21549 0.68 0.889636
Target:  5'- uUUCGAGgaCGGCGGCG-CGgcGCAGcGGCu -3'
miRNA:   3'- -AGGCUCgaGUUGUCGCaGU--CGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 22278 0.66 0.939881
Target:  5'- gCCGucggugcGCUCAucugcgGCAGCGguacccgacgCGGCAGcGGCg -3'
miRNA:   3'- aGGCu------CGAGU------UGUCGCa---------GUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 26573 0.67 0.908395
Target:  5'- gCCGGGCUCAACcuguGCGccaCAGCGcccaucGGCg -3'
miRNA:   3'- aGGCUCGAGUUGu---CGCa--GUCGUc-----CCG- -5'
30177 5' -56.6 NC_006273.1 + 27025 0.66 0.932278
Target:  5'- -aCGAGCUC-GCGGCGcguagaaagccaagCGGCgcaAGGGCc -3'
miRNA:   3'- agGCUCGAGuUGUCGCa-------------GUCG---UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 30626 0.67 0.904801
Target:  5'- aCCGAGCgaaaagaAACGaucgucgucGCGUCGGCAaccgcagaucgcagcGGGCg -3'
miRNA:   3'- aGGCUCGag-----UUGU---------CGCAGUCGU---------------CCCG- -5'
30177 5' -56.6 NC_006273.1 + 30759 0.66 0.939881
Target:  5'- cCCGAGa---ACGGCGcCGGCGGcGGUg -3'
miRNA:   3'- aGGCUCgaguUGUCGCaGUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 33265 0.71 0.711241
Target:  5'- gUCCGAGUUCcagcggggccuuGCGGCGgCAGCGGuuGGCg -3'
miRNA:   3'- -AGGCUCGAGu-----------UGUCGCaGUCGUC--CCG- -5'
30177 5' -56.6 NC_006273.1 + 33333 0.66 0.948578
Target:  5'- gCCGAGCUgAACuGCGgCAGCcGcGuGCg -3'
miRNA:   3'- aGGCUCGAgUUGuCGCaGUCGuC-C-CG- -5'
30177 5' -56.6 NC_006273.1 + 35188 0.66 0.925153
Target:  5'- cUCGAGUcCAACGGCGagaAGCAaaaacgccguGGGCa -3'
miRNA:   3'- aGGCUCGaGUUGUCGCag-UCGU----------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.