miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 5' -56.6 NC_006273.1 + 36783 0.68 0.854152
Target:  5'- gCCGAGgCcCAGUGGCGgCAGCAGGuGCa -3'
miRNA:   3'- aGGCUC-GaGUUGUCGCaGUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 37329 0.66 0.944341
Target:  5'- gCCGuuGCUuuggCGGCAGCGg-AGguGGGCc -3'
miRNA:   3'- aGGCu-CGA----GUUGUCGCagUCguCCCG- -5'
30177 5' -56.6 NC_006273.1 + 37986 0.66 0.948165
Target:  5'- cCCGugcGGCUCGcgcgcccACAGCG-CGGCGcgcGGGUg -3'
miRNA:   3'- aGGC---UCGAGU-------UGUCGCaGUCGU---CCCG- -5'
30177 5' -56.6 NC_006273.1 + 38067 0.67 0.910746
Target:  5'- gUCC-AGCUCGggcagcagccgccgcGCGGCcUCGGCGgcGGGCg -3'
miRNA:   3'- -AGGcUCGAGU---------------UGUCGcAGUCGU--CCCG- -5'
30177 5' -56.6 NC_006273.1 + 38074 0.67 0.914205
Target:  5'- aUCGAGCgucaCGGCAcGcCGUCuugaacGCAGGGCc -3'
miRNA:   3'- aGGCUCGa---GUUGU-C-GCAGu-----CGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 38624 0.68 0.853392
Target:  5'- gCCGAcGCacggccgUCAGCAGCGaC-GCGGGGUg -3'
miRNA:   3'- aGGCU-CG-------AGUUGUCGCaGuCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 38825 0.76 0.443244
Target:  5'- gUCgGAGCgccggcugaggCAGCAGCGUCGcgcGCGGGGUg -3'
miRNA:   3'- -AGgCUCGa----------GUUGUCGCAGU---CGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 39166 0.7 0.769833
Target:  5'- gCCGGGCUgCGgcggugcuccgaGCGGCGUU-GCGGGGUu -3'
miRNA:   3'- aGGCUCGA-GU------------UGUCGCAGuCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 39214 0.67 0.908395
Target:  5'- gUCCGAGCggCAGCAGCGUgcccGCGucGCg -3'
miRNA:   3'- -AGGCUCGa-GUUGUCGCAgu--CGUccCG- -5'
30177 5' -56.6 NC_006273.1 + 39827 0.67 0.908395
Target:  5'- aCgGGGCUCAGC-GUGUgGcGCGGcGGCg -3'
miRNA:   3'- aGgCUCGAGUUGuCGCAgU-CGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 40874 0.68 0.853392
Target:  5'- uUCgGGGCggCGACGGCGUUguuuucgGGCGugcuGGGCg -3'
miRNA:   3'- -AGgCUCGa-GUUGUCGCAG-------UCGU----CCCG- -5'
30177 5' -56.6 NC_006273.1 + 41399 0.69 0.838591
Target:  5'- cCCGGGCaaCGGCGcCGUCGGagccCAGGGCg -3'
miRNA:   3'- aGGCUCGa-GUUGUcGCAGUC----GUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 46808 0.67 0.914205
Target:  5'- cCCGAGgaCAuCAGCGUgCAcCuGGGCg -3'
miRNA:   3'- aGGCUCgaGUuGUCGCA-GUcGuCCCG- -5'
30177 5' -56.6 NC_006273.1 + 51583 0.67 0.919792
Target:  5'- aCgGAGgggUGGCGGCGgCAGCGGGGUc -3'
miRNA:   3'- aGgCUCga-GUUGUCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 52555 0.66 0.938499
Target:  5'- gCCGAGCUCGucgccgccguugccACAggaaccgguGCcUCcGCAGGGCc -3'
miRNA:   3'- aGGCUCGAGU--------------UGU---------CGcAGuCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 55731 0.66 0.944341
Target:  5'- aCCGA-CUCGguGCGGCGUuaCAGCAcGGUg -3'
miRNA:   3'- aGGCUcGAGU--UGUCGCA--GUCGUcCCG- -5'
30177 5' -56.6 NC_006273.1 + 56427 0.68 0.854152
Target:  5'- aCCuGGUgucGCGGCGUCGGUAGaGGCu -3'
miRNA:   3'- aGGcUCGaguUGUCGCAGUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 57697 0.67 0.902362
Target:  5'- gCCGcAGCgc--CAGCGUCGGCGGcuccgagaGGCg -3'
miRNA:   3'- aGGC-UCGaguuGUCGCAGUCGUC--------CCG- -5'
30177 5' -56.6 NC_006273.1 + 62032 0.66 0.935197
Target:  5'- gCCGAaCagAGCGGCGgcaccgCGGCGGcGGCg -3'
miRNA:   3'- aGGCUcGagUUGUCGCa-----GUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 63627 0.67 0.902362
Target:  5'- gCCGAGCUCAugGcGCGcUCcGUAGcGCa -3'
miRNA:   3'- aGGCUCGAGUugU-CGC-AGuCGUCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.