miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 5' -56.6 NC_006273.1 + 235021 0.73 0.614391
Target:  5'- gUCgCGGGCgugugcCGGguGUGUCGGCGGGGUg -3'
miRNA:   3'- -AG-GCUCGa-----GUUguCGCAGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 234855 0.69 0.805397
Target:  5'- gUCgGGGUgugUCGGgGGCG-CGGCGGGGUg -3'
miRNA:   3'- -AGgCUCG---AGUUgUCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 234107 0.67 0.908395
Target:  5'- gUCCGAGCggCAGCAGCGUgcccGCGucGCg -3'
miRNA:   3'- -AGGCUCGa-GUUGUCGCAgu--CGUccCG- -5'
30177 5' -56.6 NC_006273.1 + 233717 0.76 0.443244
Target:  5'- gUCgGAGCgccggcugaggCAGCAGCGUCGcgcGCGGGGUg -3'
miRNA:   3'- -AGgCUCGa----------GUUGUCGCAGU---CGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 232960 0.67 0.910746
Target:  5'- gUCC-AGCUCGggcagcagccgccgcGCGGCcUCGGCGgcGGGCg -3'
miRNA:   3'- -AGGcUCGAGU---------------UGUCGcAGUCGU--CCCG- -5'
30177 5' -56.6 NC_006273.1 + 232879 0.66 0.948165
Target:  5'- cCCGugcGGCUCGcgcgcccACAGCG-CGGCGcgcGGGUg -3'
miRNA:   3'- aGGC---UCGAGU-------UGUCGCaGUCGU---CCCG- -5'
30177 5' -56.6 NC_006273.1 + 232742 0.69 0.805397
Target:  5'- cCCaGAGCUUG--AGCGUCGGCGcGGCg -3'
miRNA:   3'- aGG-CUCGAGUugUCGCAGUCGUcCCG- -5'
30177 5' -56.6 NC_006273.1 + 231132 0.66 0.939881
Target:  5'- aCCGuGC---ACGGCGUCGGCAGaGUu -3'
miRNA:   3'- aGGCuCGaguUGUCGCAGUCGUCcCG- -5'
30177 5' -56.6 NC_006273.1 + 220779 0.66 0.925153
Target:  5'- ---cAGCguauccCAACGGCGUCAGCGGcucgcGGCa -3'
miRNA:   3'- aggcUCGa-----GUUGUCGCAGUCGUC-----CCG- -5'
30177 5' -56.6 NC_006273.1 + 216967 0.74 0.581702
Target:  5'- uUCgCGGGC-CGucuuggccacggccGCAGCGUCAGUGGGGUc -3'
miRNA:   3'- -AG-GCUCGaGU--------------UGUCGCAGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 214151 0.72 0.673992
Target:  5'- cUCCaGGCgaUCAGCAGCGgcagccaCAGCGGcGGCa -3'
miRNA:   3'- -AGGcUCG--AGUUGUCGCa------GUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 211778 0.7 0.791428
Target:  5'- cCCGGGCUCGGCGGCGacgugaacgauccuUCAucGCguuugccgugcagcAGGGCc -3'
miRNA:   3'- aGGCUCGAGUUGUCGC--------------AGU--CG--------------UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 204819 0.67 0.894831
Target:  5'- -aCGAGCUCGAaggacgacggAGCGUCcgaggagacgcuGUAGGGCg -3'
miRNA:   3'- agGCUCGAGUUg---------UCGCAGu-----------CGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 200304 0.69 0.805397
Target:  5'- -gCGuGCUgGAUAGCGUgAGCggcacgGGGGCg -3'
miRNA:   3'- agGCuCGAgUUGUCGCAgUCG------UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 197333 0.73 0.624335
Target:  5'- cCCGAGCUgGACcGCGagCAGUGGGaGCg -3'
miRNA:   3'- aGGCUCGAgUUGuCGCa-GUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 197048 0.76 0.470133
Target:  5'- gUCgGGGCggacgCGACGGCGgCGGCAGcGGCa -3'
miRNA:   3'- -AGgCUCGa----GUUGUCGCaGUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 197043 0.69 0.838591
Target:  5'- -aCGAGCggCAGCGGCGacgaCGGUGGcGGCg -3'
miRNA:   3'- agGCUCGa-GUUGUCGCa---GUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 196838 0.66 0.935197
Target:  5'- cCCGcgcgguGGCUgGGuuGCG-CGGCGGGGCc -3'
miRNA:   3'- aGGC------UCGAgUUguCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 196602 0.71 0.71318
Target:  5'- gCCGAGaggCGACGGCGcUCGGaCGGGaGCu -3'
miRNA:   3'- aGGCUCga-GUUGUCGC-AGUC-GUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 195083 0.73 0.614391
Target:  5'- gUCgCGGGCgugugcCGGguGUGUCGGCGGGGUg -3'
miRNA:   3'- -AG-GCUCGa-----GUUguCGCAGUCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.