miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 5' -56.6 NC_006273.1 + 188042 0.7 0.796709
Target:  5'- uUUCGGGCgauGACAGCGcCGGCGGcGCg -3'
miRNA:   3'- -AGGCUCGag-UUGUCGCaGUCGUCcCG- -5'
30177 5' -56.6 NC_006273.1 + 185996 0.73 0.624335
Target:  5'- gCCGAaaaCGACgAGgGUCGGCAGGGCa -3'
miRNA:   3'- aGGCUcgaGUUG-UCgCAGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 167312 0.72 0.664094
Target:  5'- cUCCG-GCcaCAGCGGCGgCAGCGGcGGCc -3'
miRNA:   3'- -AGGCuCGa-GUUGUCGCaGUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 33265 0.71 0.711241
Target:  5'- gUCCGAGUUCcagcggggccuuGCGGCGgCAGCGGuuGGCg -3'
miRNA:   3'- -AGGCUCGAGu-----------UGUCGCaGUCGUC--CCG- -5'
30177 5' -56.6 NC_006273.1 + 196602 0.71 0.71318
Target:  5'- gCCGAGaggCGACGGCGcUCGGaCGGGaGCu -3'
miRNA:   3'- aGGCUCga-GUUGUCGC-AGUC-GUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 144465 0.71 0.751322
Target:  5'- -aCGGGCUCGcgcgcCGGCGUCucGCcGGGCa -3'
miRNA:   3'- agGCUCGAGUu----GUCGCAGu-CGuCCCG- -5'
30177 5' -56.6 NC_006273.1 + 39166 0.7 0.769833
Target:  5'- gCCGGGCUgCGgcggugcuccgaGCGGCGUU-GCGGGGUu -3'
miRNA:   3'- aGGCUCGA-GU------------UGUCGCAGuCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 211778 0.7 0.791428
Target:  5'- cCCGGGCUCGGCGGCGacgugaacgauccuUCAucGCguuugccgugcagcAGGGCc -3'
miRNA:   3'- aGGCUCGAGUUGUCGC--------------AGU--CG--------------UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 189313 0.7 0.796709
Target:  5'- aCCGcGGCaccuGCGGCGUCGGC-GGGUg -3'
miRNA:   3'- aGGC-UCGagu-UGUCGCAGUCGuCCCG- -5'
30177 5' -56.6 NC_006273.1 + 197333 0.73 0.624335
Target:  5'- cCCGAGCUgGACcGCGagCAGUGGGaGCg -3'
miRNA:   3'- aGGCUCGAgUUGuCGCa-GUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 119707 0.73 0.614391
Target:  5'- cUCCaGGGCgUCuacCAGCGUCAGCGGGaugGCg -3'
miRNA:   3'- -AGG-CUCG-AGuu-GUCGCAGUCGUCC---CG- -5'
30177 5' -56.6 NC_006273.1 + 195083 0.73 0.614391
Target:  5'- gUCgCGGGCgugugcCGGguGUGUCGGCGGGGUg -3'
miRNA:   3'- -AG-GCUCGa-----GUUguCGCAGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 121762 0.77 0.384065
Target:  5'- cCCGAcGCgugaaUAACAGCGUCGGCuacGGGCa -3'
miRNA:   3'- aGGCU-CGa----GUUGUCGCAGUCGu--CCCG- -5'
30177 5' -56.6 NC_006273.1 + 94877 0.77 0.417243
Target:  5'- cCCG-GCUCGACGGCaGUCGGUcccggaagguugGGGGCu -3'
miRNA:   3'- aGGCuCGAGUUGUCG-CAGUCG------------UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 233717 0.76 0.443244
Target:  5'- gUCgGAGCgccggcugaggCAGCAGCGUCGcgcGCGGGGUg -3'
miRNA:   3'- -AGgCUCGa----------GUUGUCGCAGU---CGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 197048 0.76 0.470133
Target:  5'- gUCgGGGCggacgCGACGGCGgCGGCAGcGGCa -3'
miRNA:   3'- -AGgCUCGa----GUUGUCGCaGUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 163071 0.76 0.470133
Target:  5'- gUCCGAGg-CGGCGGCGaCGGCGGcGGCu -3'
miRNA:   3'- -AGGCUCgaGUUGUCGCaGUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 76257 0.75 0.488513
Target:  5'- aUCCGGGCcgucaCAACGGCGguggcacCAGCGGGGg -3'
miRNA:   3'- -AGGCUCGa----GUUGUCGCa------GUCGUCCCg -5'
30177 5' -56.6 NC_006273.1 + 216967 0.74 0.581702
Target:  5'- uUCgCGGGC-CGucuuggccacggccGCAGCGUCAGUGGGGUc -3'
miRNA:   3'- -AG-GCUCGaGU--------------UGUCGCAGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 167206 0.73 0.594547
Target:  5'- gCCG-GCguaAACAGCGUCAGCGGccGGUg -3'
miRNA:   3'- aGGCuCGag-UUGUCGCAGUCGUC--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.