miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30177 5' -56.6 NC_006273.1 + 163327 0.77 0.387303
Target:  5'- gCCGAGCUCGuacacugcucgcucuGCGGCaGUCAGC-GGGUa -3'
miRNA:   3'- aGGCUCGAGU---------------UGUCG-CAGUCGuCCCG- -5'
30177 5' -56.6 NC_006273.1 + 24 0.69 0.805397
Target:  5'- gUCgGGGUgugUCGGgGGCG-CGGCGGGGUg -3'
miRNA:   3'- -AGgCUCG---AGUUgUCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 87458 0.69 0.813937
Target:  5'- gCCGAcGCUCAuCGGCGUCcGUAGucacGGCc -3'
miRNA:   3'- aGGCU-CGAGUuGUCGCAGuCGUC----CCG- -5'
30177 5' -56.6 NC_006273.1 + 142174 0.66 0.948578
Target:  5'- aUCCGGGagUAGCGucuaCGUCAGCAGGuGUa -3'
miRNA:   3'- -AGGCUCgaGUUGUc---GCAGUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 147549 0.75 0.497829
Target:  5'- -aCGAgGCU-GGCGGCGUCGGCGGGaGCa -3'
miRNA:   3'- agGCU-CGAgUUGUCGCAGUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 122839 0.74 0.545501
Target:  5'- gCUGAcGCggCGACcGCGUCAGaCGGGGCg -3'
miRNA:   3'- aGGCU-CGa-GUUGuCGCAGUC-GUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 190 0.73 0.614391
Target:  5'- gUCgCGGGCgugugcCGGguGUGUCGGCGGGGUg -3'
miRNA:   3'- -AG-GCUCGa-----GUUguCGCAGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 235021 0.73 0.614391
Target:  5'- gUCgCGGGCgugugcCGGguGUGUCGGCGGGGUg -3'
miRNA:   3'- -AG-GCUCGa-----GUUguCGCAGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 214151 0.72 0.673992
Target:  5'- cUCCaGGCgaUCAGCAGCGgcagccaCAGCGGcGGCa -3'
miRNA:   3'- -AGGcUCG--AGUUGUCGCa------GUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 200304 0.69 0.805397
Target:  5'- -gCGuGCUgGAUAGCGUgAGCggcacgGGGGCg -3'
miRNA:   3'- agGCuCGAgUUGUCGCAgUCG------UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 116965 0.72 0.693683
Target:  5'- -gCGGGCUCugggaagcuGCGGCGgcuugggCAGCAGcGGCg -3'
miRNA:   3'- agGCUCGAGu--------UGUCGCa------GUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 96246 0.73 0.624335
Target:  5'- aCCGAcuuuaaaaagugGCUCGACGGCGgcuUCAGUaccgccgucgAGGGCg -3'
miRNA:   3'- aGGCU------------CGAGUUGUCGC---AGUCG----------UCCCG- -5'
30177 5' -56.6 NC_006273.1 + 38825 0.76 0.443244
Target:  5'- gUCgGAGCgccggcugaggCAGCAGCGUCGcgcGCGGGGUg -3'
miRNA:   3'- -AGgCUCGa----------GUUGUCGCAGU---CGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 162993 0.7 0.769833
Target:  5'- ---aGGCUCGACGGCGgCAGCuGcGGCg -3'
miRNA:   3'- aggcUCGAGUUGUCGCaGUCGuC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 194632 0.76 0.451221
Target:  5'- uUCCGcuucuucGGCUCGACAGcCGUCAGCcucGGCg -3'
miRNA:   3'- -AGGC-------UCGAGUUGUC-GCAGUCGuc-CCG- -5'
30177 5' -56.6 NC_006273.1 + 2440 0.73 0.624335
Target:  5'- cCCGAGCUgGACcGCGagCAGUGGGaGCg -3'
miRNA:   3'- aGGCUCGAgUUGuCGCa-GUCGUCC-CG- -5'
30177 5' -56.6 NC_006273.1 + 130591 0.69 0.805397
Target:  5'- --aGAGCggCAGCAGCuUCAGCAGGuGg -3'
miRNA:   3'- aggCUCGa-GUUGUCGcAGUCGUCC-Cg -5'
30177 5' -56.6 NC_006273.1 + 234855 0.69 0.805397
Target:  5'- gUCgGGGUgugUCGGgGGCG-CGGCGGGGUg -3'
miRNA:   3'- -AGgCUCG---AGUUgUCGCaGUCGUCCCG- -5'
30177 5' -56.6 NC_006273.1 + 2155 0.76 0.470133
Target:  5'- gUCgGGGCggacgCGACGGCGgCGGCAGcGGCa -3'
miRNA:   3'- -AGgCUCGa----GUUGUCGCaGUCGUC-CCG- -5'
30177 5' -56.6 NC_006273.1 + 173514 0.73 0.594547
Target:  5'- gUUCGugcaacuGCUCGGCGGCGUaCAGCGGGucGCg -3'
miRNA:   3'- -AGGCu------CGAGUUGUCGCA-GUCGUCC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.