miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30178 3' -52 NC_006273.1 + 113595 0.66 0.997356
Target:  5'- uCUGGUAcaguacUACAUCgGgC-CGUGGUACGc -3'
miRNA:   3'- -GACCAU------AUGUGGgCaGaGCACCAUGC- -5'
30178 3' -52 NC_006273.1 + 21264 0.66 0.996368
Target:  5'- gUGGggcaACugCUGUCUCGaugcgccuccggUGGUGCGu -3'
miRNA:   3'- gACCaua-UGugGGCAGAGC------------ACCAUGC- -5'
30178 3' -52 NC_006273.1 + 227912 0.66 0.996312
Target:  5'- -aGGUaacuucaGUGgGCCCGUCgUCGUGGaguuggacUACGa -3'
miRNA:   3'- gaCCA-------UAUgUGGGCAG-AGCACC--------AUGC- -5'
30178 3' -52 NC_006273.1 + 189206 0.67 0.995094
Target:  5'- gCUGGUcgGCGuuCCCGg--CGUGGaUACGu -3'
miRNA:   3'- -GACCAuaUGU--GGGCagaGCACC-AUGC- -5'
30178 3' -52 NC_006273.1 + 227801 0.67 0.993833
Target:  5'- aUGGcgcUGUGCGucgucucuucguCCCGUCUCccucuguggucguggGUGGUGCGa -3'
miRNA:   3'- gACC---AUAUGU------------GGGCAGAG---------------CACCAUGC- -5'
30178 3' -52 NC_006273.1 + 88610 0.69 0.980347
Target:  5'- aUGGUGU-UAgCCGUCuUCGUGGUcuACGc -3'
miRNA:   3'- gACCAUAuGUgGGCAG-AGCACCA--UGC- -5'
30178 3' -52 NC_006273.1 + 161932 0.69 0.973175
Target:  5'- aCUGGUuaucguUGgGCaCCGUCaUCGUGGUgGCGa -3'
miRNA:   3'- -GACCAu-----AUgUG-GGCAG-AGCACCA-UGC- -5'
30178 3' -52 NC_006273.1 + 35238 0.69 0.972637
Target:  5'- -gGGUGaGCGCCCGUCUgCGauuuauuuaacaGGUACGa -3'
miRNA:   3'- gaCCAUaUGUGGGCAGA-GCa-----------CCAUGC- -5'
30178 3' -52 NC_006273.1 + 86020 0.7 0.964275
Target:  5'- uUGGUGUACAUCuCGUUgcuuUCGUGGaGCu -3'
miRNA:   3'- gACCAUAUGUGG-GCAG----AGCACCaUGc -5'
30178 3' -52 NC_006273.1 + 206112 0.7 0.960896
Target:  5'- uCUGGUAgUACACCCGgggugUCggCGUGGgcACGg -3'
miRNA:   3'- -GACCAU-AUGUGGGC-----AGa-GCACCa-UGC- -5'
30178 3' -52 NC_006273.1 + 68536 0.7 0.95349
Target:  5'- uCUGGacUGCAUCCGUC-CGgUGGUGCc -3'
miRNA:   3'- -GACCauAUGUGGGCAGaGC-ACCAUGc -5'
30178 3' -52 NC_006273.1 + 145391 0.71 0.940701
Target:  5'- -gGGUGcGCACCCG-CUugccCGUGGUGCc -3'
miRNA:   3'- gaCCAUaUGUGGGCaGA----GCACCAUGc -5'
30178 3' -52 NC_006273.1 + 166811 1.1 0.011178
Target:  5'- uCUGGUAUACACCCGUCUCGUGGUACGa -3'
miRNA:   3'- -GACCAUAUGUGGGCAGAGCACCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.