Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30178 | 3' | -52 | NC_006273.1 | + | 113595 | 0.66 | 0.997356 |
Target: 5'- uCUGGUAcaguacUACAUCgGgC-CGUGGUACGc -3' miRNA: 3'- -GACCAU------AUGUGGgCaGaGCACCAUGC- -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 21264 | 0.66 | 0.996368 |
Target: 5'- gUGGggcaACugCUGUCUCGaugcgccuccggUGGUGCGu -3' miRNA: 3'- gACCaua-UGugGGCAGAGC------------ACCAUGC- -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 227912 | 0.66 | 0.996312 |
Target: 5'- -aGGUaacuucaGUGgGCCCGUCgUCGUGGaguuggacUACGa -3' miRNA: 3'- gaCCA-------UAUgUGGGCAG-AGCACC--------AUGC- -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 227801 | 0.67 | 0.993833 |
Target: 5'- aUGGcgcUGUGCGucgucucuucguCCCGUCUCccucuguggucguggGUGGUGCGa -3' miRNA: 3'- gACC---AUAUGU------------GGGCAGAG---------------CACCAUGC- -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 189206 | 0.67 | 0.995094 |
Target: 5'- gCUGGUcgGCGuuCCCGg--CGUGGaUACGu -3' miRNA: 3'- -GACCAuaUGU--GGGCagaGCACC-AUGC- -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 35238 | 0.69 | 0.972637 |
Target: 5'- -gGGUGaGCGCCCGUCUgCGauuuauuuaacaGGUACGa -3' miRNA: 3'- gaCCAUaUGUGGGCAGA-GCa-----------CCAUGC- -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 161932 | 0.69 | 0.973175 |
Target: 5'- aCUGGUuaucguUGgGCaCCGUCaUCGUGGUgGCGa -3' miRNA: 3'- -GACCAu-----AUgUG-GGCAG-AGCACCA-UGC- -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 88610 | 0.69 | 0.980347 |
Target: 5'- aUGGUGU-UAgCCGUCuUCGUGGUcuACGc -3' miRNA: 3'- gACCAUAuGUgGGCAG-AGCACCA--UGC- -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 86020 | 0.7 | 0.964275 |
Target: 5'- uUGGUGUACAUCuCGUUgcuuUCGUGGaGCu -3' miRNA: 3'- gACCAUAUGUGG-GCAG----AGCACCaUGc -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 206112 | 0.7 | 0.960896 |
Target: 5'- uCUGGUAgUACACCCGgggugUCggCGUGGgcACGg -3' miRNA: 3'- -GACCAU-AUGUGGGC-----AGa-GCACCa-UGC- -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 68536 | 0.7 | 0.95349 |
Target: 5'- uCUGGacUGCAUCCGUC-CGgUGGUGCc -3' miRNA: 3'- -GACCauAUGUGGGCAGaGC-ACCAUGc -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 145391 | 0.71 | 0.940701 |
Target: 5'- -gGGUGcGCACCCG-CUugccCGUGGUGCc -3' miRNA: 3'- gaCCAUaUGUGGGCaGA----GCACCAUGc -5' |
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30178 | 3' | -52 | NC_006273.1 | + | 166811 | 1.1 | 0.011178 |
Target: 5'- uCUGGUAUACACCCGUCUCGUGGUACGa -3' miRNA: 3'- -GACCAUAUGUGGGCAGAGCACCAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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