miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30178 5' -57.9 NC_006273.1 + 103396 0.65 0.930081
Target:  5'- aGGCGCauagacguaacaaGCCGGACaGGGaGCGuUCCAGc -3'
miRNA:   3'- -CCGUGg------------UGGCCUG-CCUaCGUcAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 161677 0.66 0.927078
Target:  5'- cGGCGCUcuGCCGGcuGCGGcgGCAcucgcUCCAc -3'
miRNA:   3'- -CCGUGG--UGGCC--UGCCuaCGUc----AGGUc -5'
30178 5' -57.9 NC_006273.1 + 210527 0.66 0.927078
Target:  5'- gGGCAaauUgAUCGGACaGGGUGCAGUUg-- -3'
miRNA:   3'- -CCGU---GgUGGCCUG-CCUACGUCAGguc -5'
30178 5' -57.9 NC_006273.1 + 192030 0.66 0.923996
Target:  5'- uGGUGuCCAUCGuGgacgaauagcagaccGCGGgcGCAGUCCGGg -3'
miRNA:   3'- -CCGU-GGUGGC-C---------------UGCCuaCGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 117435 0.66 0.921898
Target:  5'- aGGUGCUACCGuGGCaGGUGCGucgCCGGc -3'
miRNA:   3'- -CCGUGGUGGC-CUGcCUACGUca-GGUC- -5'
30178 5' -57.9 NC_006273.1 + 125587 0.66 0.921898
Target:  5'- cGUGUCGCC--GCGGAUGCAGUCCu- -3'
miRNA:   3'- cCGUGGUGGccUGCCUACGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 115576 0.66 0.920302
Target:  5'- uGGUGCUGCugcuguugugggugCGGACGG-UGCGGgugCCGGg -3'
miRNA:   3'- -CCGUGGUG--------------GCCUGCCuACGUCa--GGUC- -5'
30178 5' -57.9 NC_006273.1 + 204712 0.66 0.916501
Target:  5'- cGGCACCG-CGGcCGGccGCAGgaagCCGc -3'
miRNA:   3'- -CCGUGGUgGCCuGCCuaCGUCa---GGUc -5'
30178 5' -57.9 NC_006273.1 + 165125 0.66 0.916501
Target:  5'- aGCACCGgcucuCCGGugGGGagcUGCGGUUg-- -3'
miRNA:   3'- cCGUGGU-----GGCCugCCU---ACGUCAGguc -5'
30178 5' -57.9 NC_006273.1 + 156871 0.66 0.910887
Target:  5'- cGGCGCCcgguguCCGGGCGGcgccGCAGgguUCCu- -3'
miRNA:   3'- -CCGUGGu-----GGCCUGCCua--CGUC---AGGuc -5'
30178 5' -57.9 NC_006273.1 + 102523 0.66 0.910887
Target:  5'- aGGCugCucUCGGgauGCGaGAUGgGGUCCAGc -3'
miRNA:   3'- -CCGugGu-GGCC---UGC-CUACgUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 191440 0.66 0.910887
Target:  5'- gGGCGCUGCUGuuGCGGAUGCuGGUCg-- -3'
miRNA:   3'- -CCGUGGUGGCc-UGCCUACG-UCAGguc -5'
30178 5' -57.9 NC_006273.1 + 78515 0.66 0.910887
Target:  5'- cGGCGCCGcCCGGAcacCGGgcGCcGUCaGGa -3'
miRNA:   3'- -CCGUGGU-GGCCU---GCCuaCGuCAGgUC- -5'
30178 5' -57.9 NC_006273.1 + 89389 0.66 0.905057
Target:  5'- -cCACCACCuGGACGGG-GgGGaCCGGg -3'
miRNA:   3'- ccGUGGUGG-CCUGCCUaCgUCaGGUC- -5'
30178 5' -57.9 NC_006273.1 + 141017 0.66 0.905057
Target:  5'- cGGC-CCA-CGGcccCGGAUGguGcUCCAGg -3'
miRNA:   3'- -CCGuGGUgGCCu--GCCUACguC-AGGUC- -5'
30178 5' -57.9 NC_006273.1 + 190472 0.66 0.905057
Target:  5'- aGUugCGCCGGACGGcguUGUGGcgCgCAGg -3'
miRNA:   3'- cCGugGUGGCCUGCCu--ACGUCa-G-GUC- -5'
30178 5' -57.9 NC_006273.1 + 190023 0.66 0.905057
Target:  5'- uGGCGgUugCGGugGGAUGaCGGgCUGGu -3'
miRNA:   3'- -CCGUgGugGCCugCCUAC-GUCaGGUC- -5'
30178 5' -57.9 NC_006273.1 + 47455 0.67 0.899014
Target:  5'- cGCGCUGCUgccagaauGGAUGGAUGCgguacauguggcGGUCCAa -3'
miRNA:   3'- cCGUGGUGG--------CCUGCCUACG------------UCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 196999 0.67 0.899014
Target:  5'- cGGCGgCGaCGGACGGcgGCGGUaaCAGc -3'
miRNA:   3'- -CCGUgGUgGCCUGCCuaCGUCAg-GUC- -5'
30178 5' -57.9 NC_006273.1 + 160126 0.67 0.89276
Target:  5'- aGGCgGCCGCCGcGGCGGccaGCGcuucGUCCAu -3'
miRNA:   3'- -CCG-UGGUGGC-CUGCCua-CGU----CAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.