miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30178 5' -57.9 NC_006273.1 + 166848 1.11 0.002421
Target:  5'- cGGCACCACCGGACGGAUGCAGUCCAGa -3'
miRNA:   3'- -CCGUGGUGGCCUGCCUACGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 151985 0.76 0.412631
Target:  5'- gGGCGCCGCCGGGcCGGGUggcggcggcaGCAGcCCGa -3'
miRNA:   3'- -CCGUGGUGGCCU-GCCUA----------CGUCaGGUc -5'
30178 5' -57.9 NC_006273.1 + 157729 0.74 0.490323
Target:  5'- cGCGCCGCCGuGagcaucuGCGuGAUGCAGUCgCAGg -3'
miRNA:   3'- cCGUGGUGGC-C-------UGC-CUACGUCAG-GUC- -5'
30178 5' -57.9 NC_006273.1 + 64877 0.74 0.534951
Target:  5'- cGGCACCACCgagacgugcgaccuGGACGGcuacAUGU-GUCCGGg -3'
miRNA:   3'- -CCGUGGUGG--------------CCUGCC----UACGuCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 39780 0.73 0.566446
Target:  5'- uGGCGCCGCCuugGGGCc-GUGCAGUCUGGa -3'
miRNA:   3'- -CCGUGGUGG---CCUGccUACGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 234672 0.73 0.566446
Target:  5'- uGGCGCCGCCuugGGGCc-GUGCAGUCUGGa -3'
miRNA:   3'- -CCGUGGUGG---CCUGccUACGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 96615 0.73 0.566446
Target:  5'- cGGagaaGCCgacgagggAUCGGGCGGGUGCAG-CCAGa -3'
miRNA:   3'- -CCg---UGG--------UGGCCUGCCUACGUCaGGUC- -5'
30178 5' -57.9 NC_006273.1 + 162732 0.73 0.566446
Target:  5'- cGGCGgCAagaaCGaGACGGAgcaGCAGUCCGGu -3'
miRNA:   3'- -CCGUgGUg---GC-CUGCCUa--CGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 201971 0.73 0.585769
Target:  5'- cGCGCCGCCGacgcccgaGGCGG-UGCGcGUCCAGc -3'
miRNA:   3'- cCGUGGUGGC--------CUGCCuACGU-CAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 26121 0.72 0.614966
Target:  5'- -aCGCCGCCGGGCGc-UGCGGUCCc- -3'
miRNA:   3'- ccGUGGUGGCCUGCcuACGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 141169 0.72 0.62473
Target:  5'- cGGaCugCGCCGGGgGGcgGCGGgcacgCCGGg -3'
miRNA:   3'- -CC-GugGUGGCCUgCCuaCGUCa----GGUC- -5'
30178 5' -57.9 NC_006273.1 + 144419 0.72 0.6345
Target:  5'- cGGCGCCGCgGcGGCGGA--CGGUUCGGg -3'
miRNA:   3'- -CCGUGGUGgC-CUGCCUacGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 154670 0.72 0.6345
Target:  5'- cGGCACCugCGGGCaGGUG-GG-CCAGa -3'
miRNA:   3'- -CCGUGGugGCCUGcCUACgUCaGGUC- -5'
30178 5' -57.9 NC_006273.1 + 62043 0.72 0.654027
Target:  5'- cGGCGgCACCGcGGCGGcgGCGGacuugaucgCCAGu -3'
miRNA:   3'- -CCGUgGUGGC-CUGCCuaCGUCa--------GGUC- -5'
30178 5' -57.9 NC_006273.1 + 1015 0.71 0.69283
Target:  5'- gGGUugCGCCggGGACGGggGguGUgCGGg -3'
miRNA:   3'- -CCGugGUGG--CCUGCCuaCguCAgGUC- -5'
30178 5' -57.9 NC_006273.1 + 40953 0.71 0.69283
Target:  5'- gGGUugCGCCggGGACGGggGguGUgCGGg -3'
miRNA:   3'- -CCGugGUGG--CCUGCCuaCguCAgGUC- -5'
30178 5' -57.9 NC_006273.1 + 119903 0.71 0.702435
Target:  5'- cGCGCCGCUGGcucugaaaGaGGUGCAGUCCGc -3'
miRNA:   3'- cCGUGGUGGCCug------C-CUACGUCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 44803 0.7 0.711985
Target:  5'- gGGCGCCGgCGGACGuGAcucgGCAG-CCGc -3'
miRNA:   3'- -CCGUGGUgGCCUGC-CUa---CGUCaGGUc -5'
30178 5' -57.9 NC_006273.1 + 150768 0.7 0.711985
Target:  5'- --aGCCGCCGGGCGcuguGGUGCAGcagCCGGc -3'
miRNA:   3'- ccgUGGUGGCCUGC----CUACGUCa--GGUC- -5'
30178 5' -57.9 NC_006273.1 + 89992 0.7 0.730893
Target:  5'- gGGCACCACgGGcaaGCGGGUGCGcacCCGc -3'
miRNA:   3'- -CCGUGGUGgCC---UGCCUACGUca-GGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.