miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30178 5' -57.9 NC_006273.1 + 193470 0.67 0.886297
Target:  5'- gGGCGCCGCUaguGGugGcGGUGUu-UCCAGc -3'
miRNA:   3'- -CCGUGGUGG---CCugC-CUACGucAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 22751 0.67 0.872762
Target:  5'- cGGUACCGCUgGGAUGGGUGUuuuuuGUUCu- -3'
miRNA:   3'- -CCGUGGUGG-CCUGCCUACGu----CAGGuc -5'
30178 5' -57.9 NC_006273.1 + 166577 0.67 0.865698
Target:  5'- cGGCGCCGCCGGcuACGcGUcCGGguUCCAGu -3'
miRNA:   3'- -CCGUGGUGGCC--UGCcUAcGUC--AGGUC- -5'
30178 5' -57.9 NC_006273.1 + 164555 0.67 0.865698
Target:  5'- aGGUACCGgCGGuguUGGA-GCGGcgCCAGa -3'
miRNA:   3'- -CCGUGGUgGCCu--GCCUaCGUCa-GGUC- -5'
30178 5' -57.9 NC_006273.1 + 86677 0.68 0.861367
Target:  5'- cGCGCCACCGG-CGaGAUGCcgcauaggcgacggaGGagcUCCAGc -3'
miRNA:   3'- cCGUGGUGGCCuGC-CUACG---------------UC---AGGUC- -5'
30178 5' -57.9 NC_006273.1 + 215015 0.68 0.851
Target:  5'- cGCACCGCCGGGuc---GCGGUCCGc -3'
miRNA:   3'- cCGUGGUGGCCUgccuaCGUCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 120728 0.68 0.851
Target:  5'- gGGCACCAgguugCGGGCcaGGAUGCcGgccgCCAGg -3'
miRNA:   3'- -CCGUGGUg----GCCUG--CCUACGuCa---GGUC- -5'
30178 5' -57.9 NC_006273.1 + 189317 0.68 0.843377
Target:  5'- cGGCACCugCGGcguCGGcgGguGgguggCCAc -3'
miRNA:   3'- -CCGUGGugGCCu--GCCuaCguCa----GGUc -5'
30178 5' -57.9 NC_006273.1 + 30672 0.68 0.843377
Target:  5'- cGGCuuCCugCGGcCGGccGCGGUgCCGGc -3'
miRNA:   3'- -CCGu-GGugGCCuGCCuaCGUCA-GGUC- -5'
30178 5' -57.9 NC_006273.1 + 72640 0.68 0.835579
Target:  5'- aGCACCACCGGACuGcUGCuccGUCUc- -3'
miRNA:   3'- cCGUGGUGGCCUGcCuACGu--CAGGuc -5'
30178 5' -57.9 NC_006273.1 + 101144 0.68 0.835579
Target:  5'- -uCGCCGCCGuGAUGG-UGCGGUUCGc -3'
miRNA:   3'- ccGUGGUGGC-CUGCCuACGUCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 170807 0.68 0.835579
Target:  5'- gGGCACaAUUGGugGGuGUGCAGUUCu- -3'
miRNA:   3'- -CCGUGgUGGCCugCC-UACGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 105112 0.68 0.819484
Target:  5'- cGGCGCUugCGGACGcacGUugAGUCCAa -3'
miRNA:   3'- -CCGUGGugGCCUGCcuaCG--UCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 7917 0.68 0.819484
Target:  5'- aGGUAuCCGCgUGGACGGAaacgGCGGUagugaCCAGg -3'
miRNA:   3'- -CCGU-GGUG-GCCUGCCUa---CGUCA-----GGUC- -5'
30178 5' -57.9 NC_006273.1 + 218610 0.69 0.794196
Target:  5'- cGGCuagacGCUGCagGGGCGGcgaGCGGUCCAGg -3'
miRNA:   3'- -CCG-----UGGUGg-CCUGCCua-CGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 79845 0.69 0.794196
Target:  5'- uGCACCACCucgGGGUGGAUGCGGUg--- -3'
miRNA:   3'- cCGUGGUGG---CCUGCCUACGUCAgguc -5'
30178 5' -57.9 NC_006273.1 + 153597 0.69 0.76771
Target:  5'- cGGCGugACCGG-CGG-UGCGGUCgCGGg -3'
miRNA:   3'- -CCGUggUGGCCuGCCuACGUCAG-GUC- -5'
30178 5' -57.9 NC_006273.1 + 78696 0.7 0.758651
Target:  5'- gGGCACCGCCGc-CGGAggcGCGGUUCc- -3'
miRNA:   3'- -CCGUGGUGGCcuGCCUa--CGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 123076 0.7 0.749489
Target:  5'- aGGCgaaacGCCACUGGGuCGGcuggcgccucgGUGCGGUCgCAGg -3'
miRNA:   3'- -CCG-----UGGUGGCCU-GCC-----------UACGUCAG-GUC- -5'
30178 5' -57.9 NC_006273.1 + 137478 0.7 0.749489
Target:  5'- gGGUGCUGCCGGGCGGcuuUGCcGUCUc- -3'
miRNA:   3'- -CCGUGGUGGCCUGCCu--ACGuCAGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.