miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30178 5' -57.9 NC_006273.1 + 1015 0.71 0.69283
Target:  5'- gGGUugCGCCggGGACGGggGguGUgCGGg -3'
miRNA:   3'- -CCGugGUGG--CCUGCCuaCguCAgGUC- -5'
30178 5' -57.9 NC_006273.1 + 7917 0.68 0.819484
Target:  5'- aGGUAuCCGCgUGGACGGAaacgGCGGUagugaCCAGg -3'
miRNA:   3'- -CCGU-GGUG-GCCUGCCUa---CGUCA-----GGUC- -5'
30178 5' -57.9 NC_006273.1 + 22751 0.67 0.872762
Target:  5'- cGGUACCGCUgGGAUGGGUGUuuuuuGUUCu- -3'
miRNA:   3'- -CCGUGGUGG-CCUGCCUACGu----CAGGuc -5'
30178 5' -57.9 NC_006273.1 + 26121 0.72 0.614966
Target:  5'- -aCGCCGCCGGGCGc-UGCGGUCCc- -3'
miRNA:   3'- ccGUGGUGGCCUGCcuACGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 30672 0.68 0.843377
Target:  5'- cGGCuuCCugCGGcCGGccGCGGUgCCGGc -3'
miRNA:   3'- -CCGu-GGugGCCuGCCuaCGUCA-GGUC- -5'
30178 5' -57.9 NC_006273.1 + 39780 0.73 0.566446
Target:  5'- uGGCGCCGCCuugGGGCc-GUGCAGUCUGGa -3'
miRNA:   3'- -CCGUGGUGG---CCUGccUACGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 40953 0.71 0.69283
Target:  5'- gGGUugCGCCggGGACGGggGguGUgCGGg -3'
miRNA:   3'- -CCGugGUGG--CCUGCCuaCguCAgGUC- -5'
30178 5' -57.9 NC_006273.1 + 44803 0.7 0.711985
Target:  5'- gGGCGCCGgCGGACGuGAcucgGCAG-CCGc -3'
miRNA:   3'- -CCGUGGUgGCCUGC-CUa---CGUCaGGUc -5'
30178 5' -57.9 NC_006273.1 + 47455 0.67 0.899014
Target:  5'- cGCGCUGCUgccagaauGGAUGGAUGCgguacauguggcGGUCCAa -3'
miRNA:   3'- cCGUGGUGG--------CCUGCCUACG------------UCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 62043 0.72 0.654027
Target:  5'- cGGCGgCACCGcGGCGGcgGCGGacuugaucgCCAGu -3'
miRNA:   3'- -CCGUgGUGGC-CUGCCuaCGUCa--------GGUC- -5'
30178 5' -57.9 NC_006273.1 + 64877 0.74 0.534951
Target:  5'- cGGCACCACCgagacgugcgaccuGGACGGcuacAUGU-GUCCGGg -3'
miRNA:   3'- -CCGUGGUGG--------------CCUGCC----UACGuCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 72640 0.68 0.835579
Target:  5'- aGCACCACCGGACuGcUGCuccGUCUc- -3'
miRNA:   3'- cCGUGGUGGCCUGcCuACGu--CAGGuc -5'
30178 5' -57.9 NC_006273.1 + 78515 0.66 0.910887
Target:  5'- cGGCGCCGcCCGGAcacCGGgcGCcGUCaGGa -3'
miRNA:   3'- -CCGUGGU-GGCCU---GCCuaCGuCAGgUC- -5'
30178 5' -57.9 NC_006273.1 + 78696 0.7 0.758651
Target:  5'- gGGCACCGCCGc-CGGAggcGCGGUUCc- -3'
miRNA:   3'- -CCGUGGUGGCcuGCCUa--CGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 79845 0.69 0.794196
Target:  5'- uGCACCACCucgGGGUGGAUGCGGUg--- -3'
miRNA:   3'- cCGUGGUGG---CCUGCCUACGUCAgguc -5'
30178 5' -57.9 NC_006273.1 + 86677 0.68 0.861367
Target:  5'- cGCGCCACCGG-CGaGAUGCcgcauaggcgacggaGGagcUCCAGc -3'
miRNA:   3'- cCGUGGUGGCCuGC-CUACG---------------UC---AGGUC- -5'
30178 5' -57.9 NC_006273.1 + 89389 0.66 0.905057
Target:  5'- -cCACCACCuGGACGGG-GgGGaCCGGg -3'
miRNA:   3'- ccGUGGUGG-CCUGCCUaCgUCaGGUC- -5'
30178 5' -57.9 NC_006273.1 + 89992 0.7 0.730893
Target:  5'- gGGCACCACgGGcaaGCGGGUGCGcacCCGc -3'
miRNA:   3'- -CCGUGGUGgCC---UGCCUACGUca-GGUc -5'
30178 5' -57.9 NC_006273.1 + 96615 0.73 0.566446
Target:  5'- cGGagaaGCCgacgagggAUCGGGCGGGUGCAG-CCAGa -3'
miRNA:   3'- -CCg---UGG--------UGGCCUGCCUACGUCaGGUC- -5'
30178 5' -57.9 NC_006273.1 + 101144 0.68 0.835579
Target:  5'- -uCGCCGCCGuGAUGG-UGCGGUUCGc -3'
miRNA:   3'- ccGUGGUGGC-CUGCCuACGUCAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.