miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30178 5' -57.9 NC_006273.1 + 102523 0.66 0.910887
Target:  5'- aGGCugCucUCGGgauGCGaGAUGgGGUCCAGc -3'
miRNA:   3'- -CCGugGu-GGCC---UGC-CUACgUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 103396 0.65 0.930081
Target:  5'- aGGCGCauagacguaacaaGCCGGACaGGGaGCGuUCCAGc -3'
miRNA:   3'- -CCGUGg------------UGGCCUG-CCUaCGUcAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 105112 0.68 0.819484
Target:  5'- cGGCGCUugCGGACGcacGUugAGUCCAa -3'
miRNA:   3'- -CCGUGGugGCCUGCcuaCG--UCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 115576 0.66 0.920302
Target:  5'- uGGUGCUGCugcuguugugggugCGGACGG-UGCGGgugCCGGg -3'
miRNA:   3'- -CCGUGGUG--------------GCCUGCCuACGUCa--GGUC- -5'
30178 5' -57.9 NC_006273.1 + 117435 0.66 0.921898
Target:  5'- aGGUGCUACCGuGGCaGGUGCGucgCCGGc -3'
miRNA:   3'- -CCGUGGUGGC-CUGcCUACGUca-GGUC- -5'
30178 5' -57.9 NC_006273.1 + 119903 0.71 0.702435
Target:  5'- cGCGCCGCUGGcucugaaaGaGGUGCAGUCCGc -3'
miRNA:   3'- cCGUGGUGGCCug------C-CUACGUCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 120728 0.68 0.851
Target:  5'- gGGCACCAgguugCGGGCcaGGAUGCcGgccgCCAGg -3'
miRNA:   3'- -CCGUGGUg----GCCUG--CCUACGuCa---GGUC- -5'
30178 5' -57.9 NC_006273.1 + 123076 0.7 0.749489
Target:  5'- aGGCgaaacGCCACUGGGuCGGcuggcgccucgGUGCGGUCgCAGg -3'
miRNA:   3'- -CCG-----UGGUGGCCU-GCC-----------UACGUCAG-GUC- -5'
30178 5' -57.9 NC_006273.1 + 125587 0.66 0.921898
Target:  5'- cGUGUCGCC--GCGGAUGCAGUCCu- -3'
miRNA:   3'- cCGUGGUGGccUGCCUACGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 137478 0.7 0.749489
Target:  5'- gGGUGCUGCCGGGCGGcuuUGCcGUCUc- -3'
miRNA:   3'- -CCGUGGUGGCCUGCCu--ACGuCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 141017 0.66 0.905057
Target:  5'- cGGC-CCA-CGGcccCGGAUGguGcUCCAGg -3'
miRNA:   3'- -CCGuGGUgGCCu--GCCUACguC-AGGUC- -5'
30178 5' -57.9 NC_006273.1 + 141169 0.72 0.62473
Target:  5'- cGGaCugCGCCGGGgGGcgGCGGgcacgCCGGg -3'
miRNA:   3'- -CC-GugGUGGCCUgCCuaCGUCa----GGUC- -5'
30178 5' -57.9 NC_006273.1 + 144419 0.72 0.6345
Target:  5'- cGGCGCCGCgGcGGCGGA--CGGUUCGGg -3'
miRNA:   3'- -CCGUGGUGgC-CUGCCUacGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 150768 0.7 0.711985
Target:  5'- --aGCCGCCGGGCGcuguGGUGCAGcagCCGGc -3'
miRNA:   3'- ccgUGGUGGCCUGC----CUACGUCa--GGUC- -5'
30178 5' -57.9 NC_006273.1 + 151985 0.76 0.412631
Target:  5'- gGGCGCCGCCGGGcCGGGUggcggcggcaGCAGcCCGa -3'
miRNA:   3'- -CCGUGGUGGCCU-GCCUA----------CGUCaGGUc -5'
30178 5' -57.9 NC_006273.1 + 153597 0.69 0.76771
Target:  5'- cGGCGugACCGG-CGG-UGCGGUCgCGGg -3'
miRNA:   3'- -CCGUggUGGCCuGCCuACGUCAG-GUC- -5'
30178 5' -57.9 NC_006273.1 + 154670 0.72 0.6345
Target:  5'- cGGCACCugCGGGCaGGUG-GG-CCAGa -3'
miRNA:   3'- -CCGUGGugGCCUGcCUACgUCaGGUC- -5'
30178 5' -57.9 NC_006273.1 + 156871 0.66 0.910887
Target:  5'- cGGCGCCcgguguCCGGGCGGcgccGCAGgguUCCu- -3'
miRNA:   3'- -CCGUGGu-----GGCCUGCCua--CGUC---AGGuc -5'
30178 5' -57.9 NC_006273.1 + 157729 0.74 0.490323
Target:  5'- cGCGCCGCCGuGagcaucuGCGuGAUGCAGUCgCAGg -3'
miRNA:   3'- cCGUGGUGGC-C-------UGC-CUACGUCAG-GUC- -5'
30178 5' -57.9 NC_006273.1 + 160126 0.67 0.89276
Target:  5'- aGGCgGCCGCCGcGGCGGccaGCGcuucGUCCAu -3'
miRNA:   3'- -CCG-UGGUGGC-CUGCCua-CGU----CAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.