miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30178 5' -57.9 NC_006273.1 + 234672 0.73 0.566446
Target:  5'- uGGCGCCGCCuugGGGCc-GUGCAGUCUGGa -3'
miRNA:   3'- -CCGUGGUGG---CCUGccUACGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 218610 0.69 0.794196
Target:  5'- cGGCuagacGCUGCagGGGCGGcgaGCGGUCCAGg -3'
miRNA:   3'- -CCG-----UGGUGg-CCUGCCua-CGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 215015 0.68 0.851
Target:  5'- cGCACCGCCGGGuc---GCGGUCCGc -3'
miRNA:   3'- cCGUGGUGGCCUgccuaCGUCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 210527 0.66 0.927078
Target:  5'- gGGCAaauUgAUCGGACaGGGUGCAGUUg-- -3'
miRNA:   3'- -CCGU---GgUGGCCUG-CCUACGUCAGguc -5'
30178 5' -57.9 NC_006273.1 + 204712 0.66 0.916501
Target:  5'- cGGCACCG-CGGcCGGccGCAGgaagCCGc -3'
miRNA:   3'- -CCGUGGUgGCCuGCCuaCGUCa---GGUc -5'
30178 5' -57.9 NC_006273.1 + 201971 0.73 0.585769
Target:  5'- cGCGCCGCCGacgcccgaGGCGG-UGCGcGUCCAGc -3'
miRNA:   3'- cCGUGGUGGC--------CUGCCuACGU-CAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 196999 0.67 0.899014
Target:  5'- cGGCGgCGaCGGACGGcgGCGGUaaCAGc -3'
miRNA:   3'- -CCGUgGUgGCCUGCCuaCGUCAg-GUC- -5'
30178 5' -57.9 NC_006273.1 + 193470 0.67 0.886297
Target:  5'- gGGCGCCGCUaguGGugGcGGUGUu-UCCAGc -3'
miRNA:   3'- -CCGUGGUGG---CCugC-CUACGucAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 192030 0.66 0.923996
Target:  5'- uGGUGuCCAUCGuGgacgaauagcagaccGCGGgcGCAGUCCGGg -3'
miRNA:   3'- -CCGU-GGUGGC-C---------------UGCCuaCGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 191440 0.66 0.910887
Target:  5'- gGGCGCUGCUGuuGCGGAUGCuGGUCg-- -3'
miRNA:   3'- -CCGUGGUGGCc-UGCCUACG-UCAGguc -5'
30178 5' -57.9 NC_006273.1 + 190472 0.66 0.905057
Target:  5'- aGUugCGCCGGACGGcguUGUGGcgCgCAGg -3'
miRNA:   3'- cCGugGUGGCCUGCCu--ACGUCa-G-GUC- -5'
30178 5' -57.9 NC_006273.1 + 190023 0.66 0.905057
Target:  5'- uGGCGgUugCGGugGGAUGaCGGgCUGGu -3'
miRNA:   3'- -CCGUgGugGCCugCCUAC-GUCaGGUC- -5'
30178 5' -57.9 NC_006273.1 + 189317 0.68 0.843377
Target:  5'- cGGCACCugCGGcguCGGcgGguGgguggCCAc -3'
miRNA:   3'- -CCGUGGugGCCu--GCCuaCguCa----GGUc -5'
30178 5' -57.9 NC_006273.1 + 170807 0.68 0.835579
Target:  5'- gGGCACaAUUGGugGGuGUGCAGUUCu- -3'
miRNA:   3'- -CCGUGgUGGCCugCC-UACGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 166848 1.11 0.002421
Target:  5'- cGGCACCACCGGACGGAUGCAGUCCAGa -3'
miRNA:   3'- -CCGUGGUGGCCUGCCUACGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 166577 0.67 0.865698
Target:  5'- cGGCGCCGCCGGcuACGcGUcCGGguUCCAGu -3'
miRNA:   3'- -CCGUGGUGGCC--UGCcUAcGUC--AGGUC- -5'
30178 5' -57.9 NC_006273.1 + 165125 0.66 0.916501
Target:  5'- aGCACCGgcucuCCGGugGGGagcUGCGGUUg-- -3'
miRNA:   3'- cCGUGGU-----GGCCugCCU---ACGUCAGguc -5'
30178 5' -57.9 NC_006273.1 + 164555 0.67 0.865698
Target:  5'- aGGUACCGgCGGuguUGGA-GCGGcgCCAGa -3'
miRNA:   3'- -CCGUGGUgGCCu--GCCUaCGUCa-GGUC- -5'
30178 5' -57.9 NC_006273.1 + 162732 0.73 0.566446
Target:  5'- cGGCGgCAagaaCGaGACGGAgcaGCAGUCCGGu -3'
miRNA:   3'- -CCGUgGUg---GC-CUGCCUa--CGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 161677 0.66 0.927078
Target:  5'- cGGCGCUcuGCCGGcuGCGGcgGCAcucgcUCCAc -3'
miRNA:   3'- -CCGUGG--UGGCC--UGCCuaCGUc----AGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.