miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30178 5' -57.9 NC_006273.1 + 22751 0.67 0.872762
Target:  5'- cGGUACCGCUgGGAUGGGUGUuuuuuGUUCu- -3'
miRNA:   3'- -CCGUGGUGG-CCUGCCUACGu----CAGGuc -5'
30178 5' -57.9 NC_006273.1 + 123076 0.7 0.749489
Target:  5'- aGGCgaaacGCCACUGGGuCGGcuggcgccucgGUGCGGUCgCAGg -3'
miRNA:   3'- -CCG-----UGGUGGCCU-GCC-----------UACGUCAG-GUC- -5'
30178 5' -57.9 NC_006273.1 + 137478 0.7 0.749489
Target:  5'- gGGUGCUGCCGGGCGGcuuUGCcGUCUc- -3'
miRNA:   3'- -CCGUGGUGGCCUGCCu--ACGuCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 218610 0.69 0.794196
Target:  5'- cGGCuagacGCUGCagGGGCGGcgaGCGGUCCAGg -3'
miRNA:   3'- -CCG-----UGGUGg-CCUGCCua-CGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 170807 0.68 0.835579
Target:  5'- gGGCACaAUUGGugGGuGUGCAGUUCu- -3'
miRNA:   3'- -CCGUGgUGGCCugCC-UACGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 101144 0.68 0.835579
Target:  5'- -uCGCCGCCGuGAUGG-UGCGGUUCGc -3'
miRNA:   3'- ccGUGGUGGC-CUGCCuACGUCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 189317 0.68 0.843377
Target:  5'- cGGCACCugCGGcguCGGcgGguGgguggCCAc -3'
miRNA:   3'- -CCGUGGugGCCu--GCCuaCguCa----GGUc -5'
30178 5' -57.9 NC_006273.1 + 120728 0.68 0.851
Target:  5'- gGGCACCAgguugCGGGCcaGGAUGCcGgccgCCAGg -3'
miRNA:   3'- -CCGUGGUg----GCCUG--CCUACGuCa---GGUC- -5'
30178 5' -57.9 NC_006273.1 + 86677 0.68 0.861367
Target:  5'- cGCGCCACCGG-CGaGAUGCcgcauaggcgacggaGGagcUCCAGc -3'
miRNA:   3'- cCGUGGUGGCCuGC-CUACG---------------UC---AGGUC- -5'
30178 5' -57.9 NC_006273.1 + 89992 0.7 0.730893
Target:  5'- gGGCACCACgGGcaaGCGGGUGCGcacCCGc -3'
miRNA:   3'- -CCGUGGUGgCC---UGCCUACGUca-GGUc -5'
30178 5' -57.9 NC_006273.1 + 150768 0.7 0.711985
Target:  5'- --aGCCGCCGGGCGcuguGGUGCAGcagCCGGc -3'
miRNA:   3'- ccgUGGUGGCCUGC----CUACGUCa--GGUC- -5'
30178 5' -57.9 NC_006273.1 + 119903 0.71 0.702435
Target:  5'- cGCGCCGCUGGcucugaaaGaGGUGCAGUCCGc -3'
miRNA:   3'- cCGUGGUGGCCug------C-CUACGUCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 151985 0.76 0.412631
Target:  5'- gGGCGCCGCCGGGcCGGGUggcggcggcaGCAGcCCGa -3'
miRNA:   3'- -CCGUGGUGGCCU-GCCUA----------CGUCaGGUc -5'
30178 5' -57.9 NC_006273.1 + 64877 0.74 0.534951
Target:  5'- cGGCACCACCgagacgugcgaccuGGACGGcuacAUGU-GUCCGGg -3'
miRNA:   3'- -CCGUGGUGG--------------CCUGCC----UACGuCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 234672 0.73 0.566446
Target:  5'- uGGCGCCGCCuugGGGCc-GUGCAGUCUGGa -3'
miRNA:   3'- -CCGUGGUGG---CCUGccUACGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 96615 0.73 0.566446
Target:  5'- cGGagaaGCCgacgagggAUCGGGCGGGUGCAG-CCAGa -3'
miRNA:   3'- -CCg---UGG--------UGGCCUGCCUACGUCaGGUC- -5'
30178 5' -57.9 NC_006273.1 + 162732 0.73 0.566446
Target:  5'- cGGCGgCAagaaCGaGACGGAgcaGCAGUCCGGu -3'
miRNA:   3'- -CCGUgGUg---GC-CUGCCUa--CGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 144419 0.72 0.6345
Target:  5'- cGGCGCCGCgGcGGCGGA--CGGUUCGGg -3'
miRNA:   3'- -CCGUGGUGgC-CUGCCUacGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 62043 0.72 0.654027
Target:  5'- cGGCGgCACCGcGGCGGcgGCGGacuugaucgCCAGu -3'
miRNA:   3'- -CCGUgGUGGC-CUGCCuaCGUCa--------GGUC- -5'
30178 5' -57.9 NC_006273.1 + 1015 0.71 0.69283
Target:  5'- gGGUugCGCCggGGACGGggGguGUgCGGg -3'
miRNA:   3'- -CCGugGUGG--CCUGCCuaCguCAgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.