miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30178 5' -57.9 NC_006273.1 + 157729 0.74 0.490323
Target:  5'- cGCGCCGCCGuGagcaucuGCGuGAUGCAGUCgCAGg -3'
miRNA:   3'- cCGUGGUGGC-C-------UGC-CUACGUCAG-GUC- -5'
30178 5' -57.9 NC_006273.1 + 166577 0.67 0.865698
Target:  5'- cGGCGCCGCCGGcuACGcGUcCGGguUCCAGu -3'
miRNA:   3'- -CCGUGGUGGCC--UGCcUAcGUC--AGGUC- -5'
30178 5' -57.9 NC_006273.1 + 160126 0.67 0.89276
Target:  5'- aGGCgGCCGCCGcGGCGGccaGCGcuucGUCCAu -3'
miRNA:   3'- -CCG-UGGUGGC-CUGCCua-CGU----CAGGUc -5'
30178 5' -57.9 NC_006273.1 + 192030 0.66 0.923996
Target:  5'- uGGUGuCCAUCGuGgacgaauagcagaccGCGGgcGCAGUCCGGg -3'
miRNA:   3'- -CCGU-GGUGGC-C---------------UGCCuaCGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 141169 0.72 0.62473
Target:  5'- cGGaCugCGCCGGGgGGcgGCGGgcacgCCGGg -3'
miRNA:   3'- -CC-GugGUGGCCUgCCuaCGUCa----GGUC- -5'
30178 5' -57.9 NC_006273.1 + 154670 0.72 0.6345
Target:  5'- cGGCACCugCGGGCaGGUG-GG-CCAGa -3'
miRNA:   3'- -CCGUGGugGCCUGcCUACgUCaGGUC- -5'
30178 5' -57.9 NC_006273.1 + 44803 0.7 0.711985
Target:  5'- gGGCGCCGgCGGACGuGAcucgGCAG-CCGc -3'
miRNA:   3'- -CCGUGGUgGCCUGC-CUa---CGUCaGGUc -5'
30178 5' -57.9 NC_006273.1 + 78696 0.7 0.758651
Target:  5'- gGGCACCGCCGc-CGGAggcGCGGUUCc- -3'
miRNA:   3'- -CCGUGGUGGCcuGCCUa--CGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 7917 0.68 0.819484
Target:  5'- aGGUAuCCGCgUGGACGGAaacgGCGGUagugaCCAGg -3'
miRNA:   3'- -CCGU-GGUG-GCCUGCCUa---CGUCA-----GGUC- -5'
30178 5' -57.9 NC_006273.1 + 164555 0.67 0.865698
Target:  5'- aGGUACCGgCGGuguUGGA-GCGGcgCCAGa -3'
miRNA:   3'- -CCGUGGUgGCCu--GCCUaCGUCa-GGUC- -5'
30178 5' -57.9 NC_006273.1 + 72640 0.68 0.835579
Target:  5'- aGCACCACCGGACuGcUGCuccGUCUc- -3'
miRNA:   3'- cCGUGGUGGCCUGcCuACGu--CAGGuc -5'
30178 5' -57.9 NC_006273.1 + 79845 0.69 0.794196
Target:  5'- uGCACCACCucgGGGUGGAUGCGGUg--- -3'
miRNA:   3'- cCGUGGUGG---CCUGCCUACGUCAgguc -5'
30178 5' -57.9 NC_006273.1 + 39780 0.73 0.566446
Target:  5'- uGGCGCCGCCuugGGGCc-GUGCAGUCUGGa -3'
miRNA:   3'- -CCGUGGUGG---CCUGccUACGUCAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 30672 0.68 0.843377
Target:  5'- cGGCuuCCugCGGcCGGccGCGGUgCCGGc -3'
miRNA:   3'- -CCGu-GGugGCCuGCCuaCGUCA-GGUC- -5'
30178 5' -57.9 NC_006273.1 + 201971 0.73 0.585769
Target:  5'- cGCGCCGCCGacgcccgaGGCGG-UGCGcGUCCAGc -3'
miRNA:   3'- cCGUGGUGGC--------CUGCCuACGU-CAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 153597 0.69 0.76771
Target:  5'- cGGCGugACCGG-CGG-UGCGGUCgCGGg -3'
miRNA:   3'- -CCGUggUGGCCuGCCuACGUCAG-GUC- -5'
30178 5' -57.9 NC_006273.1 + 215015 0.68 0.851
Target:  5'- cGCACCGCCGGGuc---GCGGUCCGc -3'
miRNA:   3'- cCGUGGUGGCCUgccuaCGUCAGGUc -5'
30178 5' -57.9 NC_006273.1 + 193470 0.67 0.886297
Target:  5'- gGGCGCCGCUaguGGugGcGGUGUu-UCCAGc -3'
miRNA:   3'- -CCGUGGUGG---CCugC-CUACGucAGGUC- -5'
30178 5' -57.9 NC_006273.1 + 26121 0.72 0.614966
Target:  5'- -aCGCCGCCGGGCGc-UGCGGUCCc- -3'
miRNA:   3'- ccGUGGUGGCCUGCcuACGUCAGGuc -5'
30178 5' -57.9 NC_006273.1 + 40953 0.71 0.69283
Target:  5'- gGGUugCGCCggGGACGGggGguGUgCGGg -3'
miRNA:   3'- -CCGugGUGG--CCUGCCuaCguCAgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.