miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 3' -54.3 NC_006273.1 + 94954 0.65 0.978299
Target:  5'- cGACGGCuuccgggucucGCGGCgGCUCcCUCUCGg -3'
miRNA:   3'- uUUGUUGugu--------CGUCGgCGAG-GAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 130277 0.66 0.976878
Target:  5'- -uGCAAC-CGucGCAGCCGCgCCggcCUCGa -3'
miRNA:   3'- uuUGUUGuGU--CGUCGGCGaGGa--GAGC- -5'
30179 3' -54.3 NC_006273.1 + 131093 0.66 0.976635
Target:  5'- uGGACGAgGCcgagacGCGGCCGCUCUaccggcaUCUCu -3'
miRNA:   3'- -UUUGUUgUGu-----CGUCGGCGAGG-------AGAGc -5'
30179 3' -54.3 NC_006273.1 + 64030 0.66 0.976143
Target:  5'- cAugGGCGCGGCgguuuugguggcgcGGCCucCUCCUCUCu -3'
miRNA:   3'- uUugUUGUGUCG--------------UCGGc-GAGGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 218225 0.66 0.976143
Target:  5'- cGGCAugGC-GCGGCCGUcguuuccuucgucuUCCUCUUc -3'
miRNA:   3'- uUUGUugUGuCGUCGGCG--------------AGGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 38193 0.66 0.974361
Target:  5'- cGAGCccGCGCcGCGGCCGCUCaUC-CGg -3'
miRNA:   3'- -UUUGu-UGUGuCGUCGGCGAGgAGaGC- -5'
30179 3' -54.3 NC_006273.1 + 103281 0.66 0.974361
Target:  5'- uAGACGG-GCAGCGGUCGCUCCagcagCGg -3'
miRNA:   3'- -UUUGUUgUGUCGUCGGCGAGGaga--GC- -5'
30179 3' -54.3 NC_006273.1 + 131057 0.66 0.974361
Target:  5'- -uACGGgGCAGCAGCUGCgccgggCCUaUCa -3'
miRNA:   3'- uuUGUUgUGUCGUCGGCGa-----GGAgAGc -5'
30179 3' -54.3 NC_006273.1 + 134474 0.66 0.974361
Target:  5'- -uGCAGCGCGGC-GCCGC--CUCgUCGg -3'
miRNA:   3'- uuUGUUGUGUCGuCGGCGagGAG-AGC- -5'
30179 3' -54.3 NC_006273.1 + 205008 0.66 0.974099
Target:  5'- cGACGugACgAGCugcgacGCCGCgacgacaUCCUCUCGu -3'
miRNA:   3'- uUUGUugUG-UCGu-----CGGCG-------AGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 140369 0.66 0.97165
Target:  5'- -cACGAC-UGGCGGCCGgaCC-CUCGa -3'
miRNA:   3'- uuUGUUGuGUCGUCGGCgaGGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 148680 0.66 0.968739
Target:  5'- -uGC-GCGCAGCuGCUggaGCUCCUCgUCGc -3'
miRNA:   3'- uuUGuUGUGUCGuCGG---CGAGGAG-AGC- -5'
30179 3' -54.3 NC_006273.1 + 77964 0.66 0.968739
Target:  5'- cAACGGCu--GCGGCCcCUCCUcCUCGu -3'
miRNA:   3'- uUUGUUGuguCGUCGGcGAGGA-GAGC- -5'
30179 3' -54.3 NC_006273.1 + 176297 0.66 0.968132
Target:  5'- uGAGCAGCGCuacucgcuguuugGGCGGCCuGuCUCCcggcggcUCUCGg -3'
miRNA:   3'- -UUUGUUGUG-------------UCGUCGG-C-GAGG-------AGAGC- -5'
30179 3' -54.3 NC_006273.1 + 92595 0.66 0.965621
Target:  5'- --cCAGCgACGGCGGCUGCUgUUgCUCGc -3'
miRNA:   3'- uuuGUUG-UGUCGUCGGCGAgGA-GAGC- -5'
30179 3' -54.3 NC_006273.1 + 116214 0.66 0.965621
Target:  5'- -cGCAGCGagcuCAGCGGCUGUccgcgcgacaUCUUCUCGc -3'
miRNA:   3'- uuUGUUGU----GUCGUCGGCG----------AGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 94393 0.66 0.965621
Target:  5'- cGGGCAccggGCGCGGC--CCGCUCCggacCUCGg -3'
miRNA:   3'- -UUUGU----UGUGUCGucGGCGAGGa---GAGC- -5'
30179 3' -54.3 NC_006273.1 + 63825 0.67 0.962291
Target:  5'- --cCGGCAgCGGCAcGCCGCgagugaCCUCUCc -3'
miRNA:   3'- uuuGUUGU-GUCGU-CGGCGa-----GGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 13594 0.67 0.962291
Target:  5'- --uCGugAU-GCAGCCGCUgguUCUCUCGg -3'
miRNA:   3'- uuuGUugUGuCGUCGGCGA---GGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 196683 0.67 0.958743
Target:  5'- uGGCGcACGCAGCGGCCGUagUUgUCGc -3'
miRNA:   3'- uUUGU-UGUGUCGUCGGCGagGAgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.