Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30179 | 3' | -54.3 | NC_006273.1 | + | 205524 | 0.67 | 0.946747 |
Target: 5'- uGAAUAACACAGCcGCaCGUgaaguagguaggUUCUCUCGu -3' miRNA: 3'- -UUUGUUGUGUCGuCG-GCG------------AGGAGAGC- -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 152464 | 0.67 | 0.950975 |
Target: 5'- -uGCcGCGCAGCugcgccuccAGCCGCUCCgagcgcaccuUCUUGa -3' miRNA: 3'- uuUGuUGUGUCG---------UCGGCGAGG----------AGAGC- -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 197312 | 0.67 | 0.950975 |
Target: 5'- gAGGCcGCGCGGCGGCUGCUgcCCgagCUgGa -3' miRNA: 3'- -UUUGuUGUGUCGUCGGCGA--GGa--GAgC- -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 151226 | 0.67 | 0.954972 |
Target: 5'- cGACAcgcuCugGGCcgcGCCGCUCCUCgUCu -3' miRNA: 3'- uUUGUu---GugUCGu--CGGCGAGGAG-AGc -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 106860 | 0.67 | 0.954972 |
Target: 5'- aAAACGggaGCGCGGCAGCCGCgacaguaCCagUUGa -3' miRNA: 3'- -UUUGU---UGUGUCGUCGGCGa------GGagAGC- -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 13594 | 0.67 | 0.962291 |
Target: 5'- --uCGugAU-GCAGCCGCUgguUCUCUCGg -3' miRNA: 3'- uuuGUugUGuCGUCGGCGA---GGAGAGC- -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 47296 | 0.67 | 0.946747 |
Target: 5'- cGGCAACACAGCAGuCCGg-CCUUcCa -3' miRNA: 3'- uUUGUUGUGUCGUC-GGCgaGGAGaGc -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 148651 | 0.67 | 0.942285 |
Target: 5'- ---gGACGCGGCGGCUGaggUgCUCUCGu -3' miRNA: 3'- uuugUUGUGUCGUCGGCg--AgGAGAGC- -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 87528 | 0.67 | 0.942285 |
Target: 5'- --cCAGCGCGGCGGCgGuCUCUgUCUCu -3' miRNA: 3'- uuuGUUGUGUCGUCGgC-GAGG-AGAGc -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 161481 | 0.67 | 0.954972 |
Target: 5'- uAAGCAGuCACAGCGGCaguGgUCCaUCUCu -3' miRNA: 3'- -UUUGUU-GUGUCGUCGg--CgAGG-AGAGc -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 42173 | 0.67 | 0.946747 |
Target: 5'- -cGCcGCcaGCGGUAGCUGCUCCguUCUCu -3' miRNA: 3'- uuUGuUG--UGUCGUCGGCGAGG--AGAGc -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 2419 | 0.67 | 0.950975 |
Target: 5'- gAGGCcGCGCGGCGGCUGCUgcCCgagCUgGa -3' miRNA: 3'- -UUUGuUGUGUCGUCGGCGA--GGa--GAgC- -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 167256 | 0.67 | 0.954972 |
Target: 5'- ---uGGCGCAGCgagcgaucuAGCCGCUCgCuagUCUCGg -3' miRNA: 3'- uuugUUGUGUCG---------UCGGCGAG-G---AGAGC- -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 86605 | 0.67 | 0.954972 |
Target: 5'- gAGAC-GCACGGC-GCCGCcgCCggcCUCGg -3' miRNA: 3'- -UUUGuUGUGUCGuCGGCGa-GGa--GAGC- -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 153023 | 0.67 | 0.954972 |
Target: 5'- cGACAGCggcguuuguGCAcGCAGCCGCUgcagaaCCUCUUu -3' miRNA: 3'- uUUGUUG---------UGU-CGUCGGCGA------GGAGAGc -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 132554 | 0.67 | 0.954972 |
Target: 5'- cGugGACGCGGCcGgCGCgCCUUUCGa -3' miRNA: 3'- uUugUUGUGUCGuCgGCGaGGAGAGC- -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 165638 | 0.67 | 0.954972 |
Target: 5'- -cGCAGCACGGU-GCCGCggCCcggUCUCu -3' miRNA: 3'- uuUGUUGUGUCGuCGGCGa-GG---AGAGc -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 178531 | 0.67 | 0.958743 |
Target: 5'- -cGCGugGCGGCGGCgGUgguagcggcagCCUCUCu -3' miRNA: 3'- uuUGUugUGUCGUCGgCGa----------GGAGAGc -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 63825 | 0.67 | 0.962291 |
Target: 5'- --cCGGCAgCGGCAcGCCGCgagugaCCUCUCc -3' miRNA: 3'- uuuGUUGU-GUCGU-CGGCGa-----GGAGAGc -5' |
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30179 | 3' | -54.3 | NC_006273.1 | + | 196683 | 0.67 | 0.958743 |
Target: 5'- uGGCGcACGCAGCGGCCGUagUUgUCGc -3' miRNA: 3'- uUUGU-UGUGUCGUCGGCGagGAgAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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