miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 3' -54.3 NC_006273.1 + 167982 1.06 0.008249
Target:  5'- aAAACAACACAGCAGCCGCUCCUCUCGu -3'
miRNA:   3'- -UUUGUUGUGUCGUCGGCGAGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 21564 0.79 0.373536
Target:  5'- -cGCGGCGCAGCGGCUGagCCUCUCGu -3'
miRNA:   3'- uuUGUUGUGUCGUCGGCgaGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 103524 0.78 0.433455
Target:  5'- uAGGCGGuccaACuGCAGCCGCUUCUCUCGa -3'
miRNA:   3'- -UUUGUUg---UGuCGUCGGCGAGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 144770 0.77 0.508266
Target:  5'- -cACGACGCGGCGGCCGUggCCUCg-- -3'
miRNA:   3'- uuUGUUGUGUCGUCGGCGa-GGAGagc -5'
30179 3' -54.3 NC_006273.1 + 122240 0.75 0.577855
Target:  5'- uAGGCGACugAGCGGCgCGC-CCUCUgCGg -3'
miRNA:   3'- -UUUGUUGugUCGUCG-GCGaGGAGA-GC- -5'
30179 3' -54.3 NC_006273.1 + 232922 0.75 0.586984
Target:  5'- -uGCAGCGCGucccagcGCGGCCGCUCCcacugCUCGc -3'
miRNA:   3'- uuUGUUGUGU-------CGUCGGCGAGGa----GAGC- -5'
30179 3' -54.3 NC_006273.1 + 38029 0.75 0.586984
Target:  5'- -uGCAGCGCGucccagcGCGGCCGCUCCcacugCUCGc -3'
miRNA:   3'- uuUGUUGUGU-------CGUCGGCGAGGa----GAGC- -5'
30179 3' -54.3 NC_006273.1 + 233435 0.73 0.710071
Target:  5'- uAACuguACACGGCGGCCGUggCCUC-CGa -3'
miRNA:   3'- uUUGu--UGUGUCGUCGGCGa-GGAGaGC- -5'
30179 3' -54.3 NC_006273.1 + 72778 0.72 0.777822
Target:  5'- cAACAACGCGuGCAGCCGCUCggg-CGg -3'
miRNA:   3'- uUUGUUGUGU-CGUCGGCGAGgagaGC- -5'
30179 3' -54.3 NC_006273.1 + 129873 0.72 0.787052
Target:  5'- -uACGACGCAGUuuugucgcgGGCCGCUgCUCUaCGu -3'
miRNA:   3'- uuUGUUGUGUCG---------UCGGCGAgGAGA-GC- -5'
30179 3' -54.3 NC_006273.1 + 134169 0.72 0.787052
Target:  5'- cAAGCGACGC-GUGGCCGCgUCCgcCUCGg -3'
miRNA:   3'- -UUUGUUGUGuCGUCGGCG-AGGa-GAGC- -5'
30179 3' -54.3 NC_006273.1 + 141321 0.71 0.822493
Target:  5'- cGAACGACGCAGUgcguGGCCGCacaCCUgUUGg -3'
miRNA:   3'- -UUUGUUGUGUCG----UCGGCGa--GGAgAGC- -5'
30179 3' -54.3 NC_006273.1 + 91476 0.71 0.822493
Target:  5'- cAAACcGC-CAGCAGCCgggugaGCUCCUCaUCGu -3'
miRNA:   3'- -UUUGuUGuGUCGUCGG------CGAGGAG-AGC- -5'
30179 3' -54.3 NC_006273.1 + 162469 0.7 0.855173
Target:  5'- cGGCAGaaggaGCGGCGGCCGCcucccUCCUC-CGa -3'
miRNA:   3'- uUUGUUg----UGUCGUCGGCG-----AGGAGaGC- -5'
30179 3' -54.3 NC_006273.1 + 70946 0.7 0.870329
Target:  5'- -cGCGACGCGGCGuGCUGCUgCUCa-- -3'
miRNA:   3'- uuUGUUGUGUCGU-CGGCGAgGAGagc -5'
30179 3' -54.3 NC_006273.1 + 163732 0.7 0.873259
Target:  5'- gAAACAGCcgGCGGCAgGCCGCaUcgucgucgucuuccuCCUCUCGg -3'
miRNA:   3'- -UUUGUUG--UGUCGU-CGGCG-A---------------GGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 45888 0.69 0.87759
Target:  5'- -cACAGCGCGGCGGCCGggCCgC-CGa -3'
miRNA:   3'- uuUGUUGUGUCGUCGGCgaGGaGaGC- -5'
30179 3' -54.3 NC_006273.1 + 89650 0.69 0.884631
Target:  5'- -cGCAGagcCGCAGCuucuguuGCCGCUCCUCg-- -3'
miRNA:   3'- uuUGUU---GUGUCGu------CGGCGAGGAGagc -5'
30179 3' -54.3 NC_006273.1 + 147506 0.69 0.89145
Target:  5'- uGGCGAUAgCGGCGGcCCGCUCg-CUCGg -3'
miRNA:   3'- uUUGUUGU-GUCGUC-GGCGAGgaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 168167 0.69 0.89145
Target:  5'- ---aGGC-CAGCAGCCGgUCCUCgaacagCGg -3'
miRNA:   3'- uuugUUGuGUCGUCGGCgAGGAGa-----GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.