miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 3' -54.3 NC_006273.1 + 140851 0.69 0.89145
Target:  5'- cAGGCggUGC-GCGGCCGCUUCUCggggCGc -3'
miRNA:   3'- -UUUGuuGUGuCGUCGGCGAGGAGa---GC- -5'
30179 3' -54.3 NC_006273.1 + 147506 0.69 0.89145
Target:  5'- uGGCGAUAgCGGCGGcCCGCUCg-CUCGg -3'
miRNA:   3'- uUUGUUGU-GUCGUC-GGCGAGgaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 155008 0.69 0.89804
Target:  5'- --cCGcCACGGCcGCCGCUCCcgCUUGg -3'
miRNA:   3'- uuuGUuGUGUCGuCGGCGAGGa-GAGC- -5'
30179 3' -54.3 NC_006273.1 + 124693 0.69 0.89804
Target:  5'- -uGCuGCACGGCAGCCuuuacCUCCUCguaCGa -3'
miRNA:   3'- uuUGuUGUGUCGUCGGc----GAGGAGa--GC- -5'
30179 3' -54.3 NC_006273.1 + 154876 0.69 0.89804
Target:  5'- -uACGGCGCagGGCGGCCGUUUCUUUUu -3'
miRNA:   3'- uuUGUUGUG--UCGUCGGCGAGGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 189065 0.69 0.9044
Target:  5'- cGGCGGCguaGGCGGCCGCUUCUUgCGc -3'
miRNA:   3'- uUUGUUGug-UCGUCGGCGAGGAGaGC- -5'
30179 3' -54.3 NC_006273.1 + 28596 0.69 0.9044
Target:  5'- uAAGCGAgGCGguguGCGGCaGCUCCUCUgGg -3'
miRNA:   3'- -UUUGUUgUGU----CGUCGgCGAGGAGAgC- -5'
30179 3' -54.3 NC_006273.1 + 231939 0.69 0.9044
Target:  5'- ------gGCGGCGGacaCGCUCCUCUCc -3'
miRNA:   3'- uuuguugUGUCGUCg--GCGAGGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 103030 0.69 0.910525
Target:  5'- -cGCGGCgGCAGCGGCCGCggcuUCCaUCaUCGu -3'
miRNA:   3'- uuUGUUG-UGUCGUCGGCG----AGG-AG-AGC- -5'
30179 3' -54.3 NC_006273.1 + 72913 0.69 0.910525
Target:  5'- gGAGgGAgGCGGCcGCCGCUCCUuCUg- -3'
miRNA:   3'- -UUUgUUgUGUCGuCGGCGAGGA-GAgc -5'
30179 3' -54.3 NC_006273.1 + 196926 0.68 0.916415
Target:  5'- ---gGAC-CcGCAGCCGCUaCCUCUUGc -3'
miRNA:   3'- uuugUUGuGuCGUCGGCGA-GGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 116754 0.68 0.916415
Target:  5'- --uCAGCgGCAGCuAGCCGg-CCUCUCGc -3'
miRNA:   3'- uuuGUUG-UGUCG-UCGGCgaGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 232962 0.68 0.916415
Target:  5'- --cCAGCucggGCAGCAGCCGCcgcgcggCCUCggCGg -3'
miRNA:   3'- uuuGUUG----UGUCGUCGGCGa------GGAGa-GC- -5'
30179 3' -54.3 NC_006273.1 + 153795 0.68 0.916415
Target:  5'- -cGCGGcCGCGGCcGCCGCcugcgaggaCCUCUCGg -3'
miRNA:   3'- uuUGUU-GUGUCGuCGGCGa--------GGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 144650 0.68 0.916415
Target:  5'- cAAGCAGgGCAGCGGUCGCaCCUUg-- -3'
miRNA:   3'- -UUUGUUgUGUCGUCGGCGaGGAGagc -5'
30179 3' -54.3 NC_006273.1 + 38069 0.68 0.916415
Target:  5'- --cCAGCucggGCAGCAGCCGCcgcgcggCCUCggCGg -3'
miRNA:   3'- uuuGUUG----UGUCGUCGGCGa------GGAGa-GC- -5'
30179 3' -54.3 NC_006273.1 + 196167 0.68 0.922066
Target:  5'- -cGCGACGCgGGCAcGCUGCUgCCgCUCGg -3'
miRNA:   3'- uuUGUUGUG-UCGU-CGGCGA-GGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 1274 0.68 0.922066
Target:  5'- -cGCGACGCgGGCAcGCUGCUgCCgCUCGg -3'
miRNA:   3'- uuUGUUGUG-UCGU-CGGCGA-GGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 21330 0.68 0.927479
Target:  5'- -----uCACAGCAGCCGCgCUUgUCGc -3'
miRNA:   3'- uuuguuGUGUCGUCGGCGaGGAgAGC- -5'
30179 3' -54.3 NC_006273.1 + 101949 0.68 0.932146
Target:  5'- uAACGGCGCAGCaccacguugacaaGGUCGUUCUcCUCGa -3'
miRNA:   3'- uUUGUUGUGUCG-------------UCGGCGAGGaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.