miRNA display CGI


Results 21 - 40 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 3' -54.3 NC_006273.1 + 196683 0.67 0.958743
Target:  5'- uGGCGcACGCAGCGGCCGUagUUgUCGc -3'
miRNA:   3'- uUUGU-UGUGUCGUCGGCGagGAgAGC- -5'
30179 3' -54.3 NC_006273.1 + 106860 0.67 0.954972
Target:  5'- aAAACGggaGCGCGGCAGCCGCgacaguaCCagUUGa -3'
miRNA:   3'- -UUUGU---UGUGUCGUCGGCGa------GGagAGC- -5'
30179 3' -54.3 NC_006273.1 + 151226 0.67 0.954972
Target:  5'- cGACAcgcuCugGGCcgcGCCGCUCCUCgUCu -3'
miRNA:   3'- uUUGUu---GugUCGu--CGGCGAGGAG-AGc -5'
30179 3' -54.3 NC_006273.1 + 153023 0.67 0.954972
Target:  5'- cGACAGCggcguuuguGCAcGCAGCCGCUgcagaaCCUCUUu -3'
miRNA:   3'- uUUGUUG---------UGU-CGUCGGCGA------GGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 86605 0.67 0.954972
Target:  5'- gAGAC-GCACGGC-GCCGCcgCCggcCUCGg -3'
miRNA:   3'- -UUUGuUGUGUCGuCGGCGa-GGa--GAGC- -5'
30179 3' -54.3 NC_006273.1 + 167256 0.67 0.954972
Target:  5'- ---uGGCGCAGCgagcgaucuAGCCGCUCgCuagUCUCGg -3'
miRNA:   3'- uuugUUGUGUCG---------UCGGCGAG-G---AGAGC- -5'
30179 3' -54.3 NC_006273.1 + 165638 0.67 0.954972
Target:  5'- -cGCAGCACGGU-GCCGCggCCcggUCUCu -3'
miRNA:   3'- uuUGUUGUGUCGuCGGCGa-GG---AGAGc -5'
30179 3' -54.3 NC_006273.1 + 132554 0.67 0.954972
Target:  5'- cGugGACGCGGCcGgCGCgCCUUUCGa -3'
miRNA:   3'- uUugUUGUGUCGuCgGCGaGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 161481 0.67 0.954972
Target:  5'- uAAGCAGuCACAGCGGCaguGgUCCaUCUCu -3'
miRNA:   3'- -UUUGUU-GUGUCGUCGg--CgAGG-AGAGc -5'
30179 3' -54.3 NC_006273.1 + 152464 0.67 0.950975
Target:  5'- -uGCcGCGCAGCugcgccuccAGCCGCUCCgagcgcaccuUCUUGa -3'
miRNA:   3'- uuUGuUGUGUCG---------UCGGCGAGG----------AGAGC- -5'
30179 3' -54.3 NC_006273.1 + 2419 0.67 0.950975
Target:  5'- gAGGCcGCGCGGCGGCUGCUgcCCgagCUgGa -3'
miRNA:   3'- -UUUGuUGUGUCGUCGGCGA--GGa--GAgC- -5'
30179 3' -54.3 NC_006273.1 + 197312 0.67 0.950975
Target:  5'- gAGGCcGCGCGGCGGCUGCUgcCCgagCUgGa -3'
miRNA:   3'- -UUUGuUGUGUCGUCGGCGA--GGa--GAgC- -5'
30179 3' -54.3 NC_006273.1 + 168579 0.67 0.946747
Target:  5'- --cCAGCugAGCuAGCUGCUCCUgUa- -3'
miRNA:   3'- uuuGUUGugUCG-UCGGCGAGGAgAgc -5'
30179 3' -54.3 NC_006273.1 + 205524 0.67 0.946747
Target:  5'- uGAAUAACACAGCcGCaCGUgaaguagguaggUUCUCUCGu -3'
miRNA:   3'- -UUUGUUGUGUCGuCG-GCG------------AGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 143155 0.67 0.946747
Target:  5'- gAGACgGGCACGGCGcGCCGCaUCCccaacugCUCGc -3'
miRNA:   3'- -UUUG-UUGUGUCGU-CGGCG-AGGa------GAGC- -5'
30179 3' -54.3 NC_006273.1 + 131640 0.67 0.946747
Target:  5'- aAAGCGGCuACGGCcauuguGCCGCgCgUCUCGg -3'
miRNA:   3'- -UUUGUUG-UGUCGu-----CGGCGaGgAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 126705 0.67 0.946747
Target:  5'- -cACGACGCAGCAGCCGUUgUa---- -3'
miRNA:   3'- uuUGUUGUGUCGUCGGCGAgGagagc -5'
30179 3' -54.3 NC_006273.1 + 49969 0.67 0.946747
Target:  5'- -uGCAGC-CGGguGCCGCauUCCUgCUCc -3'
miRNA:   3'- uuUGUUGuGUCguCGGCG--AGGA-GAGc -5'
30179 3' -54.3 NC_006273.1 + 47296 0.67 0.946747
Target:  5'- cGGCAACACAGCAGuCCGg-CCUUcCa -3'
miRNA:   3'- uUUGUUGUGUCGUC-GGCgaGGAGaGc -5'
30179 3' -54.3 NC_006273.1 + 42173 0.67 0.946747
Target:  5'- -cGCcGCcaGCGGUAGCUGCUCCguUCUCu -3'
miRNA:   3'- uuUGuUG--UGUCGUCGGCGAGG--AGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.