miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 3' -54.3 NC_006273.1 + 148651 0.67 0.942285
Target:  5'- ---gGACGCGGCGGCUGaggUgCUCUCGu -3'
miRNA:   3'- uuugUUGUGUCGUCGGCg--AgGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 87528 0.67 0.942285
Target:  5'- --cCAGCGCGGCGGCgGuCUCUgUCUCu -3'
miRNA:   3'- uuuGUUGUGUCGUCGgC-GAGG-AGAGc -5'
30179 3' -54.3 NC_006273.1 + 113690 0.68 0.937588
Target:  5'- aGAGCGuGCGCAGCGGCUGggaUCC-CUCa -3'
miRNA:   3'- -UUUGU-UGUGUCGUCGGCg--AGGaGAGc -5'
30179 3' -54.3 NC_006273.1 + 167187 0.68 0.937588
Target:  5'- ---gGGCGCAGCGGCCGCggaggCCgg-CGu -3'
miRNA:   3'- uuugUUGUGUCGUCGGCGa----GGagaGC- -5'
30179 3' -54.3 NC_006273.1 + 188052 0.68 0.937588
Target:  5'- uGACAGCGcCGGCGGCgCGgguCUCgUCUCGu -3'
miRNA:   3'- uUUGUUGU-GUCGUCG-GC---GAGgAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 34712 0.68 0.932653
Target:  5'- uGACcGC-CGGCGGCCGCcagaUCCUCgggCGu -3'
miRNA:   3'- uUUGuUGuGUCGUCGGCG----AGGAGa--GC- -5'
30179 3' -54.3 NC_006273.1 + 101949 0.68 0.932146
Target:  5'- uAACGGCGCAGCaccacguugacaaGGUCGUUCUcCUCGa -3'
miRNA:   3'- uUUGUUGUGUCG-------------UCGGCGAGGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 21330 0.68 0.927479
Target:  5'- -----uCACAGCAGCCGCgCUUgUCGc -3'
miRNA:   3'- uuuguuGUGUCGUCGGCGaGGAgAGC- -5'
30179 3' -54.3 NC_006273.1 + 1274 0.68 0.922066
Target:  5'- -cGCGACGCgGGCAcGCUGCUgCCgCUCGg -3'
miRNA:   3'- uuUGUUGUG-UCGU-CGGCGA-GGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 196167 0.68 0.922066
Target:  5'- -cGCGACGCgGGCAcGCUGCUgCCgCUCGg -3'
miRNA:   3'- uuUGUUGUG-UCGU-CGGCGA-GGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 196926 0.68 0.916415
Target:  5'- ---gGAC-CcGCAGCCGCUaCCUCUUGc -3'
miRNA:   3'- uuugUUGuGuCGUCGGCGA-GGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 153795 0.68 0.916415
Target:  5'- -cGCGGcCGCGGCcGCCGCcugcgaggaCCUCUCGg -3'
miRNA:   3'- uuUGUU-GUGUCGuCGGCGa--------GGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 144650 0.68 0.916415
Target:  5'- cAAGCAGgGCAGCGGUCGCaCCUUg-- -3'
miRNA:   3'- -UUUGUUgUGUCGUCGGCGaGGAGagc -5'
30179 3' -54.3 NC_006273.1 + 232962 0.68 0.916415
Target:  5'- --cCAGCucggGCAGCAGCCGCcgcgcggCCUCggCGg -3'
miRNA:   3'- uuuGUUG----UGUCGUCGGCGa------GGAGa-GC- -5'
30179 3' -54.3 NC_006273.1 + 116754 0.68 0.916415
Target:  5'- --uCAGCgGCAGCuAGCCGg-CCUCUCGc -3'
miRNA:   3'- uuuGUUG-UGUCG-UCGGCgaGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 38069 0.68 0.916415
Target:  5'- --cCAGCucggGCAGCAGCCGCcgcgcggCCUCggCGg -3'
miRNA:   3'- uuuGUUG----UGUCGUCGGCGa------GGAGa-GC- -5'
30179 3' -54.3 NC_006273.1 + 103030 0.69 0.910525
Target:  5'- -cGCGGCgGCAGCGGCCGCggcuUCCaUCaUCGu -3'
miRNA:   3'- uuUGUUG-UGUCGUCGGCG----AGG-AG-AGC- -5'
30179 3' -54.3 NC_006273.1 + 72913 0.69 0.910525
Target:  5'- gGAGgGAgGCGGCcGCCGCUCCUuCUg- -3'
miRNA:   3'- -UUUgUUgUGUCGuCGGCGAGGA-GAgc -5'
30179 3' -54.3 NC_006273.1 + 189065 0.69 0.9044
Target:  5'- cGGCGGCguaGGCGGCCGCUUCUUgCGc -3'
miRNA:   3'- uUUGUUGug-UCGUCGGCGAGGAGaGC- -5'
30179 3' -54.3 NC_006273.1 + 28596 0.69 0.9044
Target:  5'- uAAGCGAgGCGguguGCGGCaGCUCCUCUgGg -3'
miRNA:   3'- -UUUGUUgUGU----CGUCGgCGAGGAGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.