miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 3' -54.3 NC_006273.1 + 1274 0.68 0.922066
Target:  5'- -cGCGACGCgGGCAcGCUGCUgCCgCUCGg -3'
miRNA:   3'- uuUGUUGUG-UCGU-CGGCGA-GGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 2419 0.67 0.950975
Target:  5'- gAGGCcGCGCGGCGGCUGCUgcCCgagCUgGa -3'
miRNA:   3'- -UUUGuUGUGUCGUCGGCGA--GGa--GAgC- -5'
30179 3' -54.3 NC_006273.1 + 13594 0.67 0.962291
Target:  5'- --uCGugAU-GCAGCCGCUgguUCUCUCGg -3'
miRNA:   3'- uuuGUugUGuCGUCGGCGA---GGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 21330 0.68 0.927479
Target:  5'- -----uCACAGCAGCCGCgCUUgUCGc -3'
miRNA:   3'- uuuguuGUGUCGUCGGCGaGGAgAGC- -5'
30179 3' -54.3 NC_006273.1 + 21564 0.79 0.373536
Target:  5'- -cGCGGCGCAGCGGCUGagCCUCUCGu -3'
miRNA:   3'- uuUGUUGUGUCGUCGGCgaGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 28596 0.69 0.9044
Target:  5'- uAAGCGAgGCGguguGCGGCaGCUCCUCUgGg -3'
miRNA:   3'- -UUUGUUgUGU----CGUCGgCGAGGAGAgC- -5'
30179 3' -54.3 NC_006273.1 + 34712 0.68 0.932653
Target:  5'- uGACcGC-CGGCGGCCGCcagaUCCUCgggCGu -3'
miRNA:   3'- uUUGuUGuGUCGUCGGCG----AGGAGa--GC- -5'
30179 3' -54.3 NC_006273.1 + 38029 0.75 0.586984
Target:  5'- -uGCAGCGCGucccagcGCGGCCGCUCCcacugCUCGc -3'
miRNA:   3'- uuUGUUGUGU-------CGUCGGCGAGGa----GAGC- -5'
30179 3' -54.3 NC_006273.1 + 38069 0.68 0.916415
Target:  5'- --cCAGCucggGCAGCAGCCGCcgcgcggCCUCggCGg -3'
miRNA:   3'- uuuGUUG----UGUCGUCGGCGa------GGAGa-GC- -5'
30179 3' -54.3 NC_006273.1 + 38193 0.66 0.974361
Target:  5'- cGAGCccGCGCcGCGGCCGCUCaUC-CGg -3'
miRNA:   3'- -UUUGu-UGUGuCGUCGGCGAGgAGaGC- -5'
30179 3' -54.3 NC_006273.1 + 42173 0.67 0.946747
Target:  5'- -cGCcGCcaGCGGUAGCUGCUCCguUCUCu -3'
miRNA:   3'- uuUGuUG--UGUCGUCGGCGAGG--AGAGc -5'
30179 3' -54.3 NC_006273.1 + 45888 0.69 0.87759
Target:  5'- -cACAGCGCGGCGGCCGggCCgC-CGa -3'
miRNA:   3'- uuUGUUGUGUCGUCGGCgaGGaGaGC- -5'
30179 3' -54.3 NC_006273.1 + 47296 0.67 0.946747
Target:  5'- cGGCAACACAGCAGuCCGg-CCUUcCa -3'
miRNA:   3'- uUUGUUGUGUCGUC-GGCgaGGAGaGc -5'
30179 3' -54.3 NC_006273.1 + 49969 0.67 0.946747
Target:  5'- -uGCAGC-CGGguGCCGCauUCCUgCUCc -3'
miRNA:   3'- uuUGUUGuGUCguCGGCG--AGGA-GAGc -5'
30179 3' -54.3 NC_006273.1 + 63825 0.67 0.962291
Target:  5'- --cCGGCAgCGGCAcGCCGCgagugaCCUCUCc -3'
miRNA:   3'- uuuGUUGU-GUCGU-CGGCGa-----GGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 64030 0.66 0.976143
Target:  5'- cAugGGCGCGGCgguuuugguggcgcGGCCucCUCCUCUCu -3'
miRNA:   3'- uUugUUGUGUCG--------------UCGGc-GAGGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 70946 0.7 0.870329
Target:  5'- -cGCGACGCGGCGuGCUGCUgCUCa-- -3'
miRNA:   3'- uuUGUUGUGUCGU-CGGCGAgGAGagc -5'
30179 3' -54.3 NC_006273.1 + 72778 0.72 0.777822
Target:  5'- cAACAACGCGuGCAGCCGCUCggg-CGg -3'
miRNA:   3'- uUUGUUGUGU-CGUCGGCGAGgagaGC- -5'
30179 3' -54.3 NC_006273.1 + 72913 0.69 0.910525
Target:  5'- gGAGgGAgGCGGCcGCCGCUCCUuCUg- -3'
miRNA:   3'- -UUUgUUgUGUCGuCGGCGAGGA-GAgc -5'
30179 3' -54.3 NC_006273.1 + 77964 0.66 0.968739
Target:  5'- cAACGGCu--GCGGCCcCUCCUcCUCGu -3'
miRNA:   3'- uUUGUUGuguCGUCGGcGAGGA-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.