miRNA display CGI


Results 21 - 40 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 3' -54.3 NC_006273.1 + 86605 0.67 0.954972
Target:  5'- gAGAC-GCACGGC-GCCGCcgCCggcCUCGg -3'
miRNA:   3'- -UUUGuUGUGUCGuCGGCGa-GGa--GAGC- -5'
30179 3' -54.3 NC_006273.1 + 87528 0.67 0.942285
Target:  5'- --cCAGCGCGGCGGCgGuCUCUgUCUCu -3'
miRNA:   3'- uuuGUUGUGUCGUCGgC-GAGG-AGAGc -5'
30179 3' -54.3 NC_006273.1 + 89650 0.69 0.884631
Target:  5'- -cGCAGagcCGCAGCuucuguuGCCGCUCCUCg-- -3'
miRNA:   3'- uuUGUU---GUGUCGu------CGGCGAGGAGagc -5'
30179 3' -54.3 NC_006273.1 + 91476 0.71 0.822493
Target:  5'- cAAACcGC-CAGCAGCCgggugaGCUCCUCaUCGu -3'
miRNA:   3'- -UUUGuUGuGUCGUCGG------CGAGGAG-AGC- -5'
30179 3' -54.3 NC_006273.1 + 92595 0.66 0.965621
Target:  5'- --cCAGCgACGGCGGCUGCUgUUgCUCGc -3'
miRNA:   3'- uuuGUUG-UGUCGUCGGCGAgGA-GAGC- -5'
30179 3' -54.3 NC_006273.1 + 94393 0.66 0.965621
Target:  5'- cGGGCAccggGCGCGGC--CCGCUCCggacCUCGg -3'
miRNA:   3'- -UUUGU----UGUGUCGucGGCGAGGa---GAGC- -5'
30179 3' -54.3 NC_006273.1 + 94954 0.65 0.978299
Target:  5'- cGACGGCuuccgggucucGCGGCgGCUCcCUCUCGg -3'
miRNA:   3'- uUUGUUGugu--------CGUCGgCGAG-GAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 101949 0.68 0.932146
Target:  5'- uAACGGCGCAGCaccacguugacaaGGUCGUUCUcCUCGa -3'
miRNA:   3'- uUUGUUGUGUCG-------------UCGGCGAGGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 103030 0.69 0.910525
Target:  5'- -cGCGGCgGCAGCGGCCGCggcuUCCaUCaUCGu -3'
miRNA:   3'- uuUGUUG-UGUCGUCGGCG----AGG-AG-AGC- -5'
30179 3' -54.3 NC_006273.1 + 103281 0.66 0.974361
Target:  5'- uAGACGG-GCAGCGGUCGCUCCagcagCGg -3'
miRNA:   3'- -UUUGUUgUGUCGUCGGCGAGGaga--GC- -5'
30179 3' -54.3 NC_006273.1 + 103524 0.78 0.433455
Target:  5'- uAGGCGGuccaACuGCAGCCGCUUCUCUCGa -3'
miRNA:   3'- -UUUGUUg---UGuCGUCGGCGAGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 106860 0.67 0.954972
Target:  5'- aAAACGggaGCGCGGCAGCCGCgacaguaCCagUUGa -3'
miRNA:   3'- -UUUGU---UGUGUCGUCGGCGa------GGagAGC- -5'
30179 3' -54.3 NC_006273.1 + 113690 0.68 0.937588
Target:  5'- aGAGCGuGCGCAGCGGCUGggaUCC-CUCa -3'
miRNA:   3'- -UUUGU-UGUGUCGUCGGCg--AGGaGAGc -5'
30179 3' -54.3 NC_006273.1 + 116214 0.66 0.965621
Target:  5'- -cGCAGCGagcuCAGCGGCUGUccgcgcgacaUCUUCUCGc -3'
miRNA:   3'- uuUGUUGU----GUCGUCGGCG----------AGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 116754 0.68 0.916415
Target:  5'- --uCAGCgGCAGCuAGCCGg-CCUCUCGc -3'
miRNA:   3'- uuuGUUG-UGUCG-UCGGCgaGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 122240 0.75 0.577855
Target:  5'- uAGGCGACugAGCGGCgCGC-CCUCUgCGg -3'
miRNA:   3'- -UUUGUUGugUCGUCG-GCGaGGAGA-GC- -5'
30179 3' -54.3 NC_006273.1 + 124693 0.69 0.89804
Target:  5'- -uGCuGCACGGCAGCCuuuacCUCCUCguaCGa -3'
miRNA:   3'- uuUGuUGUGUCGUCGGc----GAGGAGa--GC- -5'
30179 3' -54.3 NC_006273.1 + 126705 0.67 0.946747
Target:  5'- -cACGACGCAGCAGCCGUUgUa---- -3'
miRNA:   3'- uuUGUUGUGUCGUCGGCGAgGagagc -5'
30179 3' -54.3 NC_006273.1 + 129873 0.72 0.787052
Target:  5'- -uACGACGCAGUuuugucgcgGGCCGCUgCUCUaCGu -3'
miRNA:   3'- uuUGUUGUGUCG---------UCGGCGAgGAGA-GC- -5'
30179 3' -54.3 NC_006273.1 + 130277 0.66 0.976878
Target:  5'- -uGCAAC-CGucGCAGCCGCgCCggcCUCGa -3'
miRNA:   3'- uuUGUUGuGU--CGUCGGCGaGGa--GAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.