miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 3' -54.3 NC_006273.1 + 233435 0.73 0.710071
Target:  5'- uAACuguACACGGCGGCCGUggCCUC-CGa -3'
miRNA:   3'- uUUGu--UGUGUCGUCGGCGa-GGAGaGC- -5'
30179 3' -54.3 NC_006273.1 + 232962 0.68 0.916415
Target:  5'- --cCAGCucggGCAGCAGCCGCcgcgcggCCUCggCGg -3'
miRNA:   3'- uuuGUUG----UGUCGUCGGCGa------GGAGa-GC- -5'
30179 3' -54.3 NC_006273.1 + 232922 0.75 0.586984
Target:  5'- -uGCAGCGCGucccagcGCGGCCGCUCCcacugCUCGc -3'
miRNA:   3'- uuUGUUGUGU-------CGUCGGCGAGGa----GAGC- -5'
30179 3' -54.3 NC_006273.1 + 231939 0.69 0.9044
Target:  5'- ------gGCGGCGGacaCGCUCCUCUCc -3'
miRNA:   3'- uuuguugUGUCGUCg--GCGAGGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 218225 0.66 0.976143
Target:  5'- cGGCAugGC-GCGGCCGUcguuuccuucgucuUCCUCUUc -3'
miRNA:   3'- uUUGUugUGuCGUCGGCG--------------AGGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 205524 0.67 0.946747
Target:  5'- uGAAUAACACAGCcGCaCGUgaaguagguaggUUCUCUCGu -3'
miRNA:   3'- -UUUGUUGUGUCGuCG-GCG------------AGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 205008 0.66 0.974099
Target:  5'- cGACGugACgAGCugcgacGCCGCgacgacaUCCUCUCGu -3'
miRNA:   3'- uUUGUugUG-UCGu-----CGGCG-------AGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 197312 0.67 0.950975
Target:  5'- gAGGCcGCGCGGCGGCUGCUgcCCgagCUgGa -3'
miRNA:   3'- -UUUGuUGUGUCGUCGGCGA--GGa--GAgC- -5'
30179 3' -54.3 NC_006273.1 + 196926 0.68 0.916415
Target:  5'- ---gGAC-CcGCAGCCGCUaCCUCUUGc -3'
miRNA:   3'- uuugUUGuGuCGUCGGCGA-GGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 196683 0.67 0.958743
Target:  5'- uGGCGcACGCAGCGGCCGUagUUgUCGc -3'
miRNA:   3'- uUUGU-UGUGUCGUCGGCGagGAgAGC- -5'
30179 3' -54.3 NC_006273.1 + 196167 0.68 0.922066
Target:  5'- -cGCGACGCgGGCAcGCUGCUgCCgCUCGg -3'
miRNA:   3'- uuUGUUGUG-UCGU-CGGCGA-GGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 189065 0.69 0.9044
Target:  5'- cGGCGGCguaGGCGGCCGCUUCUUgCGc -3'
miRNA:   3'- uUUGUUGug-UCGUCGGCGAGGAGaGC- -5'
30179 3' -54.3 NC_006273.1 + 188052 0.68 0.937588
Target:  5'- uGACAGCGcCGGCGGCgCGgguCUCgUCUCGu -3'
miRNA:   3'- uUUGUUGU-GUCGUCG-GC---GAGgAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 178531 0.67 0.958743
Target:  5'- -cGCGugGCGGCGGCgGUgguagcggcagCCUCUCu -3'
miRNA:   3'- uuUGUugUGUCGUCGgCGa----------GGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 176297 0.66 0.968132
Target:  5'- uGAGCAGCGCuacucgcuguuugGGCGGCCuGuCUCCcggcggcUCUCGg -3'
miRNA:   3'- -UUUGUUGUG-------------UCGUCGG-C-GAGG-------AGAGC- -5'
30179 3' -54.3 NC_006273.1 + 168579 0.67 0.946747
Target:  5'- --cCAGCugAGCuAGCUGCUCCUgUa- -3'
miRNA:   3'- uuuGUUGugUCG-UCGGCGAGGAgAgc -5'
30179 3' -54.3 NC_006273.1 + 168167 0.69 0.89145
Target:  5'- ---aGGC-CAGCAGCCGgUCCUCgaacagCGg -3'
miRNA:   3'- uuugUUGuGUCGUCGGCgAGGAGa-----GC- -5'
30179 3' -54.3 NC_006273.1 + 167982 1.06 0.008249
Target:  5'- aAAACAACACAGCAGCCGCUCCUCUCGu -3'
miRNA:   3'- -UUUGUUGUGUCGUCGGCGAGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 167256 0.67 0.954972
Target:  5'- ---uGGCGCAGCgagcgaucuAGCCGCUCgCuagUCUCGg -3'
miRNA:   3'- uuugUUGUGUCG---------UCGGCGAG-G---AGAGC- -5'
30179 3' -54.3 NC_006273.1 + 167187 0.68 0.937588
Target:  5'- ---gGGCGCAGCGGCCGCggaggCCgg-CGu -3'
miRNA:   3'- uuugUUGUGUCGUCGGCGa----GGagaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.