miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 3' -54.3 NC_006273.1 + 144650 0.68 0.916415
Target:  5'- cAAGCAGgGCAGCGGUCGCaCCUUg-- -3'
miRNA:   3'- -UUUGUUgUGUCGUCGGCGaGGAGagc -5'
30179 3' -54.3 NC_006273.1 + 168167 0.69 0.89145
Target:  5'- ---aGGC-CAGCAGCCGgUCCUCgaacagCGg -3'
miRNA:   3'- uuugUUGuGUCGUCGGCgAGGAGa-----GC- -5'
30179 3' -54.3 NC_006273.1 + 147506 0.69 0.89145
Target:  5'- uGGCGAUAgCGGCGGcCCGCUCg-CUCGg -3'
miRNA:   3'- uUUGUUGU-GUCGUC-GGCGAGgaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 124693 0.69 0.89804
Target:  5'- -uGCuGCACGGCAGCCuuuacCUCCUCguaCGa -3'
miRNA:   3'- uuUGuUGUGUCGUCGGc----GAGGAGa--GC- -5'
30179 3' -54.3 NC_006273.1 + 155008 0.69 0.89804
Target:  5'- --cCGcCACGGCcGCCGCUCCcgCUUGg -3'
miRNA:   3'- uuuGUuGUGUCGuCGGCGAGGa-GAGC- -5'
30179 3' -54.3 NC_006273.1 + 28596 0.69 0.9044
Target:  5'- uAAGCGAgGCGguguGCGGCaGCUCCUCUgGg -3'
miRNA:   3'- -UUUGUUgUGU----CGUCGgCGAGGAGAgC- -5'
30179 3' -54.3 NC_006273.1 + 189065 0.69 0.9044
Target:  5'- cGGCGGCguaGGCGGCCGCUUCUUgCGc -3'
miRNA:   3'- uUUGUUGug-UCGUCGGCGAGGAGaGC- -5'
30179 3' -54.3 NC_006273.1 + 116754 0.68 0.916415
Target:  5'- --uCAGCgGCAGCuAGCCGg-CCUCUCGc -3'
miRNA:   3'- uuuGUUG-UGUCG-UCGGCgaGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 232962 0.68 0.916415
Target:  5'- --cCAGCucggGCAGCAGCCGCcgcgcggCCUCggCGg -3'
miRNA:   3'- uuuGUUG----UGUCGUCGGCGa------GGAGa-GC- -5'
30179 3' -54.3 NC_006273.1 + 140851 0.69 0.89145
Target:  5'- cAGGCggUGC-GCGGCCGCUUCUCggggCGc -3'
miRNA:   3'- -UUUGuuGUGuCGUCGGCGAGGAGa---GC- -5'
30179 3' -54.3 NC_006273.1 + 45888 0.69 0.87759
Target:  5'- -cACAGCGCGGCGGCCGggCCgC-CGa -3'
miRNA:   3'- uuUGUUGUGUCGUCGGCgaGGaGaGC- -5'
30179 3' -54.3 NC_006273.1 + 163732 0.7 0.873259
Target:  5'- gAAACAGCcgGCGGCAgGCCGCaUcgucgucgucuuccuCCUCUCGg -3'
miRNA:   3'- -UUUGUUG--UGUCGU-CGGCG-A---------------GGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 21564 0.79 0.373536
Target:  5'- -cGCGGCGCAGCGGCUGagCCUCUCGu -3'
miRNA:   3'- uuUGUUGUGUCGUCGGCgaGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 144770 0.77 0.508266
Target:  5'- -cACGACGCGGCGGCCGUggCCUCg-- -3'
miRNA:   3'- uuUGUUGUGUCGUCGGCGa-GGAGagc -5'
30179 3' -54.3 NC_006273.1 + 122240 0.75 0.577855
Target:  5'- uAGGCGACugAGCGGCgCGC-CCUCUgCGg -3'
miRNA:   3'- -UUUGUUGugUCGUCG-GCGaGGAGA-GC- -5'
30179 3' -54.3 NC_006273.1 + 232922 0.75 0.586984
Target:  5'- -uGCAGCGCGucccagcGCGGCCGCUCCcacugCUCGc -3'
miRNA:   3'- uuUGUUGUGU-------CGUCGGCGAGGa----GAGC- -5'
30179 3' -54.3 NC_006273.1 + 72778 0.72 0.777822
Target:  5'- cAACAACGCGuGCAGCCGCUCggg-CGg -3'
miRNA:   3'- uUUGUUGUGU-CGUCGGCGAGgagaGC- -5'
30179 3' -54.3 NC_006273.1 + 129873 0.72 0.787052
Target:  5'- -uACGACGCAGUuuugucgcgGGCCGCUgCUCUaCGu -3'
miRNA:   3'- uuUGUUGUGUCG---------UCGGCGAgGAGA-GC- -5'
30179 3' -54.3 NC_006273.1 + 141321 0.71 0.822493
Target:  5'- cGAACGACGCAGUgcguGGCCGCacaCCUgUUGg -3'
miRNA:   3'- -UUUGUUGUGUCG----UCGGCGa--GGAgAGC- -5'
30179 3' -54.3 NC_006273.1 + 162469 0.7 0.855173
Target:  5'- cGGCAGaaggaGCGGCGGCCGCcucccUCCUC-CGa -3'
miRNA:   3'- uUUGUUg----UGUCGUCGGCG-----AGGAGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.