miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 3' -54.3 NC_006273.1 + 103524 0.78 0.433455
Target:  5'- uAGGCGGuccaACuGCAGCCGCUUCUCUCGa -3'
miRNA:   3'- -UUUGUUg---UGuCGUCGGCGAGGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 42173 0.67 0.946747
Target:  5'- -cGCcGCcaGCGGUAGCUGCUCCguUCUCu -3'
miRNA:   3'- uuUGuUG--UGUCGUCGGCGAGG--AGAGc -5'
30179 3' -54.3 NC_006273.1 + 2419 0.67 0.950975
Target:  5'- gAGGCcGCGCGGCGGCUGCUgcCCgagCUgGa -3'
miRNA:   3'- -UUUGuUGUGUCGUCGGCGA--GGa--GAgC- -5'
30179 3' -54.3 NC_006273.1 + 130277 0.66 0.976878
Target:  5'- -uGCAAC-CGucGCAGCCGCgCCggcCUCGa -3'
miRNA:   3'- uuUGUUGuGU--CGUCGGCGaGGa--GAGC- -5'
30179 3' -54.3 NC_006273.1 + 91476 0.71 0.822493
Target:  5'- cAAACcGC-CAGCAGCCgggugaGCUCCUCaUCGu -3'
miRNA:   3'- -UUUGuUGuGUCGUCGG------CGAGGAG-AGC- -5'
30179 3' -54.3 NC_006273.1 + 70946 0.7 0.870329
Target:  5'- -cGCGACGCGGCGuGCUGCUgCUCa-- -3'
miRNA:   3'- uuUGUUGUGUCGU-CGGCGAgGAGagc -5'
30179 3' -54.3 NC_006273.1 + 164474 0.69 0.89145
Target:  5'- --uCGGCGCGGCGGCUGCUgaaCUCgugCGa -3'
miRNA:   3'- uuuGUUGUGUCGUCGGCGAg--GAGa--GC- -5'
30179 3' -54.3 NC_006273.1 + 154876 0.69 0.89804
Target:  5'- -uACGGCGCagGGCGGCCGUUUCUUUUu -3'
miRNA:   3'- uuUGUUGUG--UCGUCGGCGAGGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 72913 0.69 0.910525
Target:  5'- gGAGgGAgGCGGCcGCCGCUCCUuCUg- -3'
miRNA:   3'- -UUUgUUgUGUCGuCGGCGAGGA-GAgc -5'
30179 3' -54.3 NC_006273.1 + 101949 0.68 0.932146
Target:  5'- uAACGGCGCAGCaccacguugacaaGGUCGUUCUcCUCGa -3'
miRNA:   3'- uUUGUUGUGUCG-------------UCGGCGAGGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 196926 0.68 0.916415
Target:  5'- ---gGAC-CcGCAGCCGCUaCCUCUUGc -3'
miRNA:   3'- uuugUUGuGuCGUCGGCGA-GGAGAGC- -5'
30179 3' -54.3 NC_006273.1 + 103030 0.69 0.910525
Target:  5'- -cGCGGCgGCAGCGGCCGCggcuUCCaUCaUCGu -3'
miRNA:   3'- uuUGUUG-UGUCGUCGGCG----AGG-AG-AGC- -5'
30179 3' -54.3 NC_006273.1 + 38029 0.75 0.586984
Target:  5'- -uGCAGCGCGucccagcGCGGCCGCUCCcacugCUCGc -3'
miRNA:   3'- uuUGUUGUGU-------CGUCGGCGAGGa----GAGC- -5'
30179 3' -54.3 NC_006273.1 + 1274 0.68 0.922066
Target:  5'- -cGCGACGCgGGCAcGCUGCUgCCgCUCGg -3'
miRNA:   3'- uuUGUUGUG-UCGU-CGGCGA-GGaGAGC- -5'
30179 3' -54.3 NC_006273.1 + 233435 0.73 0.710071
Target:  5'- uAACuguACACGGCGGCCGUggCCUC-CGa -3'
miRNA:   3'- uUUGu--UGUGUCGUCGGCGa-GGAGaGC- -5'
30179 3' -54.3 NC_006273.1 + 231939 0.69 0.9044
Target:  5'- ------gGCGGCGGacaCGCUCCUCUCc -3'
miRNA:   3'- uuuguugUGUCGUCg--GCGAGGAGAGc -5'
30179 3' -54.3 NC_006273.1 + 21330 0.68 0.927479
Target:  5'- -----uCACAGCAGCCGCgCUUgUCGc -3'
miRNA:   3'- uuuguuGUGUCGUCGGCGaGGAgAGC- -5'
30179 3' -54.3 NC_006273.1 + 168579 0.67 0.946747
Target:  5'- --cCAGCugAGCuAGCUGCUCCUgUa- -3'
miRNA:   3'- uuuGUUGugUCG-UCGGCGAGGAgAgc -5'
30179 3' -54.3 NC_006273.1 + 134169 0.72 0.787052
Target:  5'- cAAGCGACGC-GUGGCCGCgUCCgcCUCGg -3'
miRNA:   3'- -UUUGUUGUGuCGUCGGCG-AGGa-GAGC- -5'
30179 3' -54.3 NC_006273.1 + 89650 0.69 0.884631
Target:  5'- -cGCAGagcCGCAGCuucuguuGCCGCUCCUCg-- -3'
miRNA:   3'- uuUGUU---GUGUCGu------CGGCGAGGAGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.